- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: I.171, R.184, F.185, D.186, R.188
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.171, A:R.184, A:D.186, A:R.188
GOL.5: 6 residues within 4Å:- Chain C: T.169, I.171, R.184, F.185, D.186, R.188
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.169, C:R.184, C:D.186, C:R.188, C:R.188
GOL.14: 5 residues within 4Å:- Chain G: I.171, R.184, F.185, D.186, R.188
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:I.171, G:R.184, G:D.186, G:R.188
GOL.17: 6 residues within 4Å:- Chain I: T.169, I.171, R.184, F.185, D.186, R.188
5 PLIP interactions:5 interactions with chain I- Hydrogen bonds: I:T.169, I:R.184, I:D.186, I:R.188, I:R.188
GOL.26: 5 residues within 4Å:- Chain M: I.171, R.184, F.185, D.186, R.188
4 PLIP interactions:4 interactions with chain M- Hydrogen bonds: M:I.171, M:R.184, M:D.186, M:R.188
GOL.29: 6 residues within 4Å:- Chain O: T.169, I.171, R.184, F.185, D.186, R.188
5 PLIP interactions:5 interactions with chain O- Hydrogen bonds: O:T.169, O:R.184, O:D.186, O:R.188, O:R.188
GOL.38: 5 residues within 4Å:- Chain S: I.171, R.184, F.185, D.186, R.188
4 PLIP interactions:4 interactions with chain S- Hydrogen bonds: S:I.171, S:R.184, S:D.186, S:R.188
GOL.41: 6 residues within 4Å:- Chain U: T.169, I.171, R.184, F.185, D.186, R.188
5 PLIP interactions:5 interactions with chain U- Hydrogen bonds: U:T.169, U:R.184, U:D.186, U:R.188, U:R.188
- 16 x CAQ: CATECHOL(Non-covalent)
CAQ.6: 5 residues within 4Å:- Chain C: N.152, P.164, R.167, E.168, I.171
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:R.167, C:E.168, C:I.171
- Hydrogen bonds: C:R.167
CAQ.8: 9 residues within 4Å:- Chain A: P.15, Y.16
- Chain D: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.7
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: D:W.149, D:R.157, A:P.15, A:Y.16
- Hydrogen bonds: D:R.157
- Water bridges: D:Q.177, A:Y.16
- pi-Stacking: D:Y.147
CAQ.10: 9 residues within 4Å:- Chain B: P.15, Y.16
- Chain E: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.9
8 PLIP interactions:5 interactions with chain E, 3 interactions with chain B- Hydrophobic interactions: E:W.149, E:R.157, B:P.15, B:Y.16
- Hydrogen bonds: E:R.157
- Water bridges: E:Q.177, B:Y.16
- pi-Stacking: E:Y.147
CAQ.12: 9 residues within 4Å:- Chain C: P.15, Y.16
- Chain F: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.11
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain F- Hydrophobic interactions: C:P.15, C:Y.16, F:W.149, F:R.157
- Water bridges: C:Y.16
- Hydrogen bonds: F:R.157
- pi-Stacking: F:Y.147
CAQ.18: 5 residues within 4Å:- Chain I: N.152, P.164, R.167, E.168, I.171
4 PLIP interactions:4 interactions with chain I- Hydrophobic interactions: I:R.167, I:E.168, I:I.171
- Hydrogen bonds: I:R.167
CAQ.20: 9 residues within 4Å:- Chain G: P.15, Y.16
- Chain J: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.19
8 PLIP interactions:5 interactions with chain J, 3 interactions with chain G- Hydrophobic interactions: J:W.149, J:R.157, G:P.15, G:Y.16
- Hydrogen bonds: J:R.157
- Water bridges: J:Q.177, G:Y.16
- pi-Stacking: J:Y.147
CAQ.22: 9 residues within 4Å:- Chain H: P.15, Y.16
- Chain K: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.21
8 PLIP interactions:3 interactions with chain H, 5 interactions with chain K- Hydrophobic interactions: H:P.15, H:Y.16, K:W.149, K:R.157
- Water bridges: H:Y.16, K:Q.177
- Hydrogen bonds: K:R.157
- pi-Stacking: K:Y.147
CAQ.24: 9 residues within 4Å:- Chain I: P.15, Y.16
- Chain L: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.23
7 PLIP interactions:3 interactions with chain I, 4 interactions with chain L- Hydrophobic interactions: I:P.15, I:Y.16, L:W.149, L:R.157
- Water bridges: I:Y.16
- Hydrogen bonds: L:R.157
- pi-Stacking: L:Y.147
CAQ.30: 5 residues within 4Å:- Chain O: N.152, P.164, R.167, E.168, I.171
4 PLIP interactions:4 interactions with chain O- Hydrophobic interactions: O:R.167, O:E.168, O:I.171
- Hydrogen bonds: O:R.167
CAQ.32: 9 residues within 4Å:- Chain M: P.15, Y.16
- Chain P: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.31
8 PLIP interactions:5 interactions with chain P, 3 interactions with chain M- Hydrophobic interactions: P:W.149, P:R.157, M:P.15, M:Y.16
- Hydrogen bonds: P:R.157
- Water bridges: P:Q.177, M:Y.16
- pi-Stacking: P:Y.147
CAQ.34: 9 residues within 4Å:- Chain N: P.15, Y.16
- Chain Q: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.33
8 PLIP interactions:3 interactions with chain N, 5 interactions with chain Q- Hydrophobic interactions: N:P.15, N:Y.16, Q:W.149, Q:R.157
- Water bridges: N:Y.16, Q:Q.177
- Hydrogen bonds: Q:R.157
- pi-Stacking: Q:Y.147
CAQ.36: 9 residues within 4Å:- Chain O: P.15, Y.16
- Chain R: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.35
7 PLIP interactions:3 interactions with chain O, 4 interactions with chain R- Hydrophobic interactions: O:P.15, O:Y.16, R:W.149, R:R.157
- Water bridges: O:Y.16
- Hydrogen bonds: R:R.157
- pi-Stacking: R:Y.147
CAQ.42: 5 residues within 4Å:- Chain U: N.152, P.164, R.167, E.168, I.171
4 PLIP interactions:4 interactions with chain U- Hydrophobic interactions: U:R.167, U:E.168, U:I.171
- Hydrogen bonds: U:R.167
CAQ.44: 9 residues within 4Å:- Chain S: P.15, Y.16
- Chain V: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.43
8 PLIP interactions:5 interactions with chain V, 3 interactions with chain S- Hydrophobic interactions: V:W.149, V:R.157, S:P.15, S:Y.16
- Hydrogen bonds: V:R.157
- Water bridges: V:Q.177, S:Y.16
- pi-Stacking: V:Y.147
CAQ.46: 9 residues within 4Å:- Chain T: P.15, Y.16
- Chain W: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.45
10 PLIP interactions:7 interactions with chain W, 3 interactions with chain T- Hydrophobic interactions: W:W.149, W:R.157, T:P.15, T:Y.16
- Hydrogen bonds: W:Y.108, W:R.157, W:H.162
- Water bridges: W:Q.177, T:Y.16
- pi-Stacking: W:Y.147
CAQ.48: 9 residues within 4Å:- Chain U: P.15, Y.16
- Chain X: Y.108, Y.147, W.149, R.157, H.160, H.162
- Ligands: FE.47
7 PLIP interactions:4 interactions with chain X, 3 interactions with chain U- Hydrophobic interactions: X:W.149, X:R.157, U:P.15, U:Y.16
- Hydrogen bonds: X:R.157
- pi-Stacking: X:Y.147
- Water bridges: U:Y.16
- 12 x FE: FE (III) ION(Non-covalent)
FE.7: 5 residues within 4Å:- Chain D: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.8
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:Y.108, D:Y.147, D:H.160, D:H.162
FE.9: 5 residues within 4Å:- Chain E: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.10
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:Y.108, E:Y.147, E:H.160, E:H.162
FE.11: 5 residues within 4Å:- Chain F: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.12
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:Y.108, F:Y.147, F:H.160, F:H.162
FE.19: 5 residues within 4Å:- Chain J: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.20
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:Y.108, J:Y.147, J:H.160, J:H.162
FE.21: 5 residues within 4Å:- Chain K: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.22
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:Y.108, K:Y.147, K:H.160, K:H.162
FE.23: 5 residues within 4Å:- Chain L: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.24
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:Y.108, L:Y.147, L:H.160, L:H.162
FE.31: 5 residues within 4Å:- Chain P: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.32
4 PLIP interactions:4 interactions with chain P- Metal complexes: P:Y.108, P:Y.147, P:H.160, P:H.162
FE.33: 5 residues within 4Å:- Chain Q: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.34
4 PLIP interactions:4 interactions with chain Q- Metal complexes: Q:Y.108, Q:Y.147, Q:H.160, Q:H.162
FE.35: 5 residues within 4Å:- Chain R: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.36
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:Y.108, R:Y.147, R:H.160, R:H.162
FE.43: 5 residues within 4Å:- Chain V: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.44
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:Y.108, V:Y.147, V:H.160, V:H.162
FE.45: 5 residues within 4Å:- Chain W: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.46
4 PLIP interactions:4 interactions with chain W- Metal complexes: W:Y.108, W:Y.147, W:H.160, W:H.162
FE.47: 5 residues within 4Å:- Chain X: Y.108, Y.147, H.160, H.162
- Ligands: CAQ.48
4 PLIP interactions:4 interactions with chain X- Metal complexes: X:Y.108, X:Y.147, X:H.160, X:H.162
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2012-08-01
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CD
ME
NF
OJ
MK
NL
OP
MQ
NR
OV
MW
NX
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 16 x CAQ: CATECHOL(Non-covalent)
- 12 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2012-08-01
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CD
ME
NF
OJ
MK
NL
OP
MQ
NR
OV
MW
NX
O