- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.83 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
- 12 x FE: FE (III) ION(Non-covalent)
FE.2: 4 residues within 4Å:- Chain D: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:Y.108, D:Y.147, D:H.160, D:H.162, H2O.21
FE.4: 4 residues within 4Å:- Chain E: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:Y.108, E:Y.147, E:H.160, E:H.162, H2O.29
FE.6: 4 residues within 4Å:- Chain F: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:Y.108, F:Y.147, F:H.160, F:H.162, H2O.35
FE.8: 4 residues within 4Å:- Chain J: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:Y.108, J:Y.147, J:H.160, J:H.162, H2O.57
FE.10: 4 residues within 4Å:- Chain K: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:Y.108, K:Y.147, K:H.160, K:H.162, H2O.64
FE.12: 4 residues within 4Å:- Chain L: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:Y.108, L:Y.147, L:H.160, L:H.162, H2O.71
FE.14: 4 residues within 4Å:- Chain P: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain P, 1 Ligand-Water interactions- Metal complexes: P:Y.108, P:Y.147, P:H.160, P:H.162, H2O.92
FE.16: 4 residues within 4Å:- Chain Q: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: Q:Y.108, Q:Y.147, Q:H.160, Q:H.162, H2O.99
FE.18: 4 residues within 4Å:- Chain R: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain R, 1 Ligand-Water interactions- Metal complexes: R:Y.108, R:Y.147, R:H.160, R:H.162, H2O.106
FE.20: 4 residues within 4Å:- Chain V: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: V:Y.108, V:Y.147, V:H.160, V:H.162, H2O.127
FE.22: 4 residues within 4Å:- Chain W: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: W:Y.108, W:Y.147, W:H.160, W:H.162, H2O.135
FE.24: 4 residues within 4Å:- Chain X: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: X:Y.108, X:Y.147, X:H.160, X:H.162, H2O.141
- 8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.3: 7 residues within 4Å:- Chain A: G.14, P.15, R.133
- Chain D: Y.24, T.26, W.149, I.191
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Y.24
BME.5: 7 residues within 4Å:- Chain B: G.14, P.15, R.133
- Chain F: Y.24, T.26, W.149, I.191
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:Y.24
BME.9: 7 residues within 4Å:- Chain G: G.14, P.15, R.133
- Chain J: Y.24, T.26, W.149, I.191
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:Y.24
BME.11: 7 residues within 4Å:- Chain H: G.14, P.15, R.133
- Chain L: Y.24, T.26, W.149, I.191
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:Y.24
BME.15: 7 residues within 4Å:- Chain M: G.14, P.15, R.133
- Chain P: Y.24, T.26, W.149, I.191
No protein-ligand interaction detected (PLIP)BME.17: 7 residues within 4Å:- Chain N: G.14, P.15, R.133
- Chain R: Y.24, T.26, W.149, I.191
No protein-ligand interaction detected (PLIP)BME.21: 7 residues within 4Å:- Chain S: G.14, P.15, R.133
- Chain V: Y.24, T.26, W.149, I.191
No protein-ligand interaction detected (PLIP)BME.23: 7 residues within 4Å:- Chain T: G.14, P.15, R.133
- Chain X: Y.24, T.26, W.149, I.191
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Knoot, C.J. et al., Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2014-12-31
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
EC
CG
AH
EI
CM
AN
EO
CS
AT
EU
CD
BE
DF
FJ
BK
DL
FP
BQ
DR
FV
BW
DX
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.83 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
- 12 x FE: FE (III) ION(Non-covalent)
- 8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Knoot, C.J. et al., Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2014-12-31
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
EC
CG
AH
EI
CM
AN
EO
CS
AT
EU
CD
BE
DF
FJ
BK
DL
FP
BQ
DR
FV
BW
DX
F