- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain B: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.138
BME.6: 4 residues within 4Å:- Chain D: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.138
BME.10: 4 residues within 4Å:- Chain F: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:S.138
BME.14: 5 residues within 4Å:- Chain H: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:S.138
BME.18: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.138
BME.22: 4 residues within 4Å:- Chain L: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:S.138
BME.26: 4 residues within 4Å:- Chain N: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:S.138
BME.30: 4 residues within 4Å:- Chain P: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:S.138
BME.34: 4 residues within 4Å:- Chain R: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:S.138
BME.38: 5 residues within 4Å:- Chain T: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:S.138
BME.42: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:S.138
BME.46: 4 residues within 4Å:- Chain X: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:S.138
- 24 x IHB: 3-IODO-4-HYDROXYBENZOIC ACID(Non-covalent)
IHB.3: 13 residues within 4Å:- Chain A: T.12, G.14, P.15, Y.16
- Chain B: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.1
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:P.15, A:Y.16, A:Y.16, B:Y.108, B:Y.147
- Water bridges: A:Y.16, B:R.150
- Halogen bonds: B:Q.177
IHB.4: 4 residues within 4Å:- Chain B: L.20, R.33
- Chain F: P.22, I.28
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain F- Hydrophobic interactions: B:L.20, F:P.22
- Water bridges: B:R.33, F:R.33
IHB.7: 13 residues within 4Å:- Chain C: T.12, G.14, P.15, Y.16
- Chain D: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.5
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:P.15, C:Y.16, C:Y.16, D:Y.108, D:Y.147
- Water bridges: C:Y.16, D:R.150
- Halogen bonds: D:Q.177
IHB.8: 4 residues within 4Å:- Chain B: P.22, I.28
- Chain D: L.20, R.33
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: B:P.22, D:L.20
- Water bridges: B:R.33, B:R.33
IHB.11: 13 residues within 4Å:- Chain E: T.12, G.14, P.15, Y.16
- Chain F: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.9
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain E- Hydrophobic interactions: F:Y.108, F:Y.147, E:P.15, E:Y.16
- Halogen bonds: F:Q.177
- Water bridges: E:Y.16
IHB.12: 4 residues within 4Å:- Chain D: P.22, I.28
- Chain F: L.20, R.33
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: D:P.22, F:L.20
- Water bridges: D:R.33, D:R.33
IHB.15: 12 residues within 4Å:- Chain G: G.14, P.15, Y.16
- Chain H: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
8 PLIP interactions:4 interactions with chain H, 4 interactions with chain G- Hydrophobic interactions: H:Y.108, H:Y.147, G:P.15, G:Y.16
- Water bridges: H:R.150
- Halogen bonds: H:Q.177
- Hydrogen bonds: G:Y.16, G:Y.16
IHB.16: 4 residues within 4Å:- Chain H: L.20, R.33
- Chain L: P.22, I.28
4 PLIP interactions:1 interactions with chain H, 3 interactions with chain L- Hydrophobic interactions: H:L.20, L:P.22, L:I.28
- Water bridges: L:R.33
IHB.19: 13 residues within 4Å:- Chain I: T.12, G.14, P.15, Y.16
- Chain J: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.17
7 PLIP interactions:4 interactions with chain J, 3 interactions with chain I- Hydrophobic interactions: J:Y.108, J:Y.147, I:P.15, I:Y.16
- Water bridges: J:R.150, I:Y.16
- Halogen bonds: J:Q.177
IHB.20: 4 residues within 4Å:- Chain H: P.22, I.28
- Chain J: L.20, R.33
4 PLIP interactions:1 interactions with chain J, 3 interactions with chain H- Hydrophobic interactions: J:L.20, H:P.22
- Water bridges: H:R.33, H:R.33
IHB.23: 11 residues within 4Å:- Chain K: G.14, P.15, Y.16
- Chain L: Y.108, Y.147, W.149, R.157, H.160, H.162, I.191
- Ligands: FE.21
6 PLIP interactions:3 interactions with chain L, 3 interactions with chain K- Hydrophobic interactions: L:Y.108, L:Y.147, K:P.15, K:Y.16
- Water bridges: L:R.150, K:Y.16
IHB.24: 4 residues within 4Å:- Chain J: P.22, I.28
- Chain L: L.20, R.33
5 PLIP interactions:2 interactions with chain L, 3 interactions with chain J- Hydrophobic interactions: L:L.20, J:P.22
- Water bridges: L:R.33, J:R.33
- Hydrogen bonds: J:R.33
IHB.27: 13 residues within 4Å:- Chain M: T.12, G.14, P.15, Y.16
- Chain N: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.25
8 PLIP interactions:4 interactions with chain N, 4 interactions with chain M- Hydrophobic interactions: N:Y.108, N:Y.147, M:P.15, M:Y.16, M:Y.16
- Water bridges: N:R.150, M:Y.16
- Halogen bonds: N:Q.177
IHB.28: 4 residues within 4Å:- Chain N: L.20, R.33
- Chain R: P.22, I.28
4 PLIP interactions:2 interactions with chain R, 2 interactions with chain N- Hydrophobic interactions: R:P.22, N:L.20
- Water bridges: R:R.33, N:R.33
IHB.31: 13 residues within 4Å:- Chain O: T.12, G.14, P.15, Y.16
- Chain P: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.29
9 PLIP interactions:5 interactions with chain P, 4 interactions with chain O- Hydrophobic interactions: P:Y.108, P:Y.147, O:P.15, O:Y.16, O:Y.16
- Hydrogen bonds: P:H.162
- Water bridges: P:R.150, O:Y.16
- Halogen bonds: P:Q.177
IHB.32: 4 residues within 4Å:- Chain N: P.22, I.28
- Chain P: L.20, R.33
4 PLIP interactions:3 interactions with chain N, 1 interactions with chain P- Hydrophobic interactions: N:P.22, P:L.20
- Water bridges: N:R.33, N:R.33
IHB.35: 13 residues within 4Å:- Chain Q: T.12, G.14, P.15, Y.16
- Chain R: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.33
6 PLIP interactions:3 interactions with chain Q, 3 interactions with chain R- Hydrophobic interactions: Q:P.15, Q:Y.16, R:Y.108, R:Y.147
- Water bridges: Q:Y.16
- Halogen bonds: R:Q.177
IHB.36: 4 residues within 4Å:- Chain P: P.22, I.28
- Chain R: L.20, R.33
4 PLIP interactions:1 interactions with chain R, 3 interactions with chain P- Hydrophobic interactions: R:L.20, P:P.22
- Water bridges: P:R.33, P:R.33
IHB.39: 12 residues within 4Å:- Chain S: G.14, P.15, Y.16
- Chain T: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.37
7 PLIP interactions:4 interactions with chain T, 3 interactions with chain S- Hydrophobic interactions: T:Y.108, T:Y.147, S:P.15, S:Y.16
- Water bridges: T:R.150
- Halogen bonds: T:Q.177
- Hydrogen bonds: S:Y.16
IHB.40: 4 residues within 4Å:- Chain T: L.20, R.33
- Chain X: P.22, I.28
4 PLIP interactions:3 interactions with chain X, 1 interactions with chain T- Hydrophobic interactions: X:P.22, X:I.28, T:L.20
- Water bridges: X:R.33
IHB.43: 13 residues within 4Å:- Chain U: T.12, G.14, P.15, Y.16
- Chain V: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.41
7 PLIP interactions:4 interactions with chain V, 3 interactions with chain U- Hydrophobic interactions: V:Y.108, V:Y.147, U:P.15, U:Y.16
- Water bridges: V:R.150, U:Y.16
- Halogen bonds: V:Q.177
IHB.44: 4 residues within 4Å:- Chain T: P.22, I.28
- Chain V: L.20, R.33
4 PLIP interactions:3 interactions with chain T, 1 interactions with chain V- Hydrophobic interactions: T:P.22, V:L.20
- Water bridges: T:R.33, T:R.33
IHB.47: 11 residues within 4Å:- Chain W: G.14, P.15, Y.16
- Chain X: Y.108, Y.147, W.149, R.157, H.160, H.162, I.191
- Ligands: FE.45
9 PLIP interactions:6 interactions with chain X, 3 interactions with chain W- Hydrophobic interactions: X:Y.108, X:Y.147, W:P.15, W:Y.16
- Hydrogen bonds: X:Y.108, X:Y.147, X:H.162
- Water bridges: X:R.150, W:Y.16
IHB.48: 4 residues within 4Å:- Chain V: P.22, I.28
- Chain X: L.20, R.33
5 PLIP interactions:3 interactions with chain V, 2 interactions with chain X- Hydrophobic interactions: V:P.22, X:L.20
- Hydrogen bonds: V:R.33
- Water bridges: V:R.33, X:R.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 24 x IHB: 3-IODO-4-HYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R