- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 5 residues within 4Å:- Chain B: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.138
BME.6: 4 residues within 4Å:- Chain D: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.138
BME.10: 4 residues within 4Å:- Chain F: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:S.138
BME.14: 5 residues within 4Å:- Chain H: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:S.138
BME.18: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.138
BME.22: 5 residues within 4Å:- Chain L: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:S.138
BME.26: 5 residues within 4Å:- Chain N: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:S.138
BME.30: 4 residues within 4Å:- Chain P: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:S.138
BME.34: 4 residues within 4Å:- Chain R: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:S.138
BME.38: 5 residues within 4Å:- Chain T: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:S.138
BME.42: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:S.138
BME.46: 5 residues within 4Å:- Chain X: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:S.138
- 24 x CHB: 3-CHLORO-4-HYDROXYBENZOIC ACID(Non-covalent)
CHB.3: 14 residues within 4Å:- Chain A: T.12, G.14, P.15, R.133
- Chain B: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.1
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Y.147, B:W.149, B:I.191, A:P.15
- Hydrogen bonds: B:R.157
- Halogen bonds: B:Q.177
- Salt bridges: A:R.133
CHB.4: 4 residues within 4Å:- Chain B: L.20, R.33
- Chain F: P.22, I.28
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain F- Hydrophobic interactions: B:L.20, F:P.22
- pi-Cation interactions: B:R.33
- Water bridges: F:R.33
CHB.7: 14 residues within 4Å:- Chain C: T.12, G.14, P.15, R.133
- Chain D: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.5
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Y.147, D:W.149, D:I.191, C:P.15
- Hydrogen bonds: D:Y.24, D:R.157
- Halogen bonds: D:Q.177
- Salt bridges: C:R.133
CHB.8: 6 residues within 4Å:- Chain B: L.20, P.22, I.28, R.33
- Chain D: L.20, R.33
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:L.20, B:P.22
- pi-Cation interactions: D:R.33
- Water bridges: B:R.33
CHB.11: 14 residues within 4Å:- Chain E: T.12, G.14, P.15, R.133
- Chain F: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.9
7 PLIP interactions:5 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:Y.147, F:W.149, F:I.191, E:P.15
- Hydrogen bonds: F:R.157
- Halogen bonds: F:Q.177
- Salt bridges: E:R.133
CHB.12: 4 residues within 4Å:- Chain D: P.22, I.28
- Chain F: L.20, R.33
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: D:P.22, D:P.22, F:L.20
- Water bridges: D:R.33
CHB.15: 14 residues within 4Å:- Chain G: T.12, G.14, P.15, R.133
- Chain H: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
8 PLIP interactions:2 interactions with chain G, 6 interactions with chain H- Hydrophobic interactions: G:P.15, H:Y.147, H:W.149, H:R.157, H:I.191
- Salt bridges: G:R.133
- Hydrogen bonds: H:R.157
- Halogen bonds: H:Q.177
CHB.16: 5 residues within 4Å:- Chain H: L.20, R.33
- Chain L: P.22, I.28, R.33
4 PLIP interactions:2 interactions with chain L, 2 interactions with chain H- Hydrophobic interactions: L:P.22, L:I.28, H:L.20
- pi-Cation interactions: H:R.33
CHB.19: 14 residues within 4Å:- Chain I: T.12, G.14, P.15, R.133
- Chain J: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.17
8 PLIP interactions:6 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:Y.147, J:W.149, J:I.191, I:P.15
- Hydrogen bonds: J:Y.24, J:R.157
- Halogen bonds: J:Q.177
- Salt bridges: I:R.133
CHB.20: 4 residues within 4Å:- Chain H: P.22, I.28
- Chain J: L.20, R.33
5 PLIP interactions:2 interactions with chain J, 3 interactions with chain H- Hydrophobic interactions: J:L.20, H:P.22, H:P.22
- pi-Cation interactions: J:R.33
- Water bridges: H:R.33
CHB.23: 14 residues within 4Å:- Chain K: T.12, G.14, P.15, R.133
- Chain L: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.21
8 PLIP interactions:6 interactions with chain L, 2 interactions with chain K- Hydrophobic interactions: L:Y.147, L:W.149, L:R.157, L:I.191, K:P.15
- Hydrogen bonds: L:R.157
- Halogen bonds: L:Q.177
- Salt bridges: K:R.133
CHB.24: 4 residues within 4Å:- Chain J: L.20, P.22, I.28
- Chain L: R.33
4 PLIP interactions:4 interactions with chain J- Hydrophobic interactions: J:P.22, J:P.22, J:I.28
- Water bridges: J:R.33
CHB.27: 14 residues within 4Å:- Chain M: T.12, G.14, P.15, R.133
- Chain N: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.25
8 PLIP interactions:6 interactions with chain N, 2 interactions with chain M- Hydrophobic interactions: N:Y.147, N:W.149, N:I.191, M:P.15
- Hydrogen bonds: N:Y.24, N:R.157
- Halogen bonds: N:Q.177
- Salt bridges: M:R.133
CHB.28: 4 residues within 4Å:- Chain N: L.20, R.33
- Chain R: P.22, I.28
4 PLIP interactions:2 interactions with chain R, 2 interactions with chain N- Hydrophobic interactions: R:P.22, N:L.20
- Water bridges: R:R.33
- pi-Cation interactions: N:R.33
CHB.31: 14 residues within 4Å:- Chain O: T.12, G.14, P.15, R.133
- Chain P: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.29
9 PLIP interactions:7 interactions with chain P, 2 interactions with chain O- Hydrophobic interactions: P:Y.147, P:W.149, P:I.191, O:P.15
- Hydrogen bonds: P:Y.147, P:R.157, P:H.162
- Halogen bonds: P:Q.177
- Salt bridges: O:R.133
CHB.32: 6 residues within 4Å:- Chain N: L.20, P.22, I.28, R.33
- Chain P: L.20, R.33
4 PLIP interactions:2 interactions with chain N, 2 interactions with chain P- Hydrophobic interactions: N:P.22, P:L.20
- Water bridges: N:R.33
- pi-Cation interactions: P:R.33
CHB.35: 14 residues within 4Å:- Chain Q: T.12, G.14, P.15, R.133
- Chain R: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.33
8 PLIP interactions:6 interactions with chain R, 2 interactions with chain Q- Hydrophobic interactions: R:Y.147, R:W.149, R:I.191, Q:P.15
- Hydrogen bonds: R:Y.24, R:R.157
- Halogen bonds: R:Q.177
- Salt bridges: Q:R.133
CHB.36: 4 residues within 4Å:- Chain P: P.22, I.28
- Chain R: L.20, R.33
4 PLIP interactions:1 interactions with chain R, 3 interactions with chain P- Hydrophobic interactions: R:L.20, P:P.22, P:P.22
- Water bridges: P:R.33
CHB.39: 14 residues within 4Å:- Chain S: T.12, G.14, P.15, R.133
- Chain T: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.37
9 PLIP interactions:7 interactions with chain T, 2 interactions with chain S- Hydrophobic interactions: T:Y.147, T:W.149, T:R.157, T:I.191, S:P.15
- Hydrogen bonds: T:Y.24, T:R.157
- Halogen bonds: T:Q.177
- Salt bridges: S:R.133
CHB.40: 5 residues within 4Å:- Chain T: L.20, R.33
- Chain X: P.22, I.28, R.33
4 PLIP interactions:2 interactions with chain T, 2 interactions with chain X- Hydrophobic interactions: T:L.20, X:P.22, X:I.28
- pi-Cation interactions: T:R.33
CHB.43: 14 residues within 4Å:- Chain U: T.12, G.14, P.15, R.133
- Chain V: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.41
7 PLIP interactions:5 interactions with chain V, 2 interactions with chain U- Hydrophobic interactions: V:Y.147, V:W.149, V:I.191, U:P.15
- Hydrogen bonds: V:R.157
- Halogen bonds: V:Q.177
- Salt bridges: U:R.133
CHB.44: 4 residues within 4Å:- Chain T: P.22, I.28
- Chain V: L.20, R.33
5 PLIP interactions:3 interactions with chain T, 2 interactions with chain V- Hydrophobic interactions: T:P.22, T:P.22, V:L.20
- Water bridges: T:R.33
- pi-Cation interactions: V:R.33
CHB.47: 14 residues within 4Å:- Chain W: T.12, G.14, P.15, R.133
- Chain X: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.45
12 PLIP interactions:10 interactions with chain X, 2 interactions with chain W- Hydrophobic interactions: X:Y.147, X:W.149, X:R.157, X:I.191, W:P.15
- Hydrogen bonds: X:Y.24, X:Y.108, X:Y.147, X:R.157, X:H.162
- Halogen bonds: X:Q.177
- Salt bridges: W:R.133
CHB.48: 4 residues within 4Å:- Chain V: L.20, P.22, I.28
- Chain X: R.33
4 PLIP interactions:4 interactions with chain V- Hydrophobic interactions: V:P.22, V:P.22, V:I.28
- Water bridges: V:R.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site. Biochemistry (1997)
- Release Date
- 1998-01-07
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 24 x CHB: 3-CHLORO-4-HYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site. Biochemistry (1997)
- Release Date
- 1998-01-07
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R