- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 68 x 3N8: 4-fluorobenzene-1,2-diol(Non-covalent)
3N8.2: 5 residues within 4Å:- Chain A: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:R.167
- Hydrogen bonds: A:R.167
3N8.4: 5 residues within 4Å:- Chain B: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:R.167
- Hydrogen bonds: B:R.167
3N8.6: 7 residues within 4Å:- Chain C: P.187, K.193, I.195, A.196, P.198, V.201
- Ligands: BME.10
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:K.193, C:K.193, C:V.201
3N8.7: 3 residues within 4Å:- Chain C: R.33
- Chain E: P.22, I.28
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain C- Hydrophobic interactions: E:P.22
- Water bridges: E:R.33
- Hydrogen bonds: C:R.33, C:R.33
- pi-Cation interactions: C:R.33
3N8.8: 8 residues within 4Å:- Chain B: L.160
- Chain C: S.38, I.39, P.40
- Chain E: R.150, P.153
- Chain W: P.215, M.216
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain C- Hydrophobic interactions: B:L.160, C:P.40
- Hydrogen bonds: E:R.150
3N8.12: 9 residues within 4Å:- Chain B: L.23, N.28, P.29, T.30
- Chain C: N.66, F.67, G.124, G.125, V.126
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:N.28, B:P.29, B:P.29
- Hydrophobic interactions: C:V.126
- pi-Stacking: C:F.67
3N8.15: 5 residues within 4Å:- Chain D: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:R.167
- Hydrogen bonds: D:R.167
3N8.20: 9 residues within 4Å:- Chain D: L.23, N.28, P.29, T.30
- Chain E: N.66, F.67, G.124, G.125, V.126
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:P.29, D:P.29
- Water bridges: D:N.28
- Hydrophobic interactions: E:F.67
3N8.21: 5 residues within 4Å:- Chain E: P.187, K.193, I.195, A.196, V.201
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:K.193, E:K.193, E:V.201
- Water bridges: E:I.195
3N8.22: 4 residues within 4Å:- Chain E: R.33
- Chain F: L.20, P.22, I.28
5 PLIP interactions:2 interactions with chain F, 3 interactions with chain E- Hydrophobic interactions: F:P.22, F:P.22
- Hydrogen bonds: E:R.33, E:R.33
- pi-Cation interactions: E:R.33
3N8.23: 5 residues within 4Å:- Chain E: N.5, S.6, Q.230, R.231, K.232
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:Q.230
- Hydrogen bonds: E:Q.230
- Water bridges: E:S.6, E:Q.230
3N8.28: 6 residues within 4Å:- Chain C: R.150
- Chain F: S.38, I.39, P.40
- Chain O: P.215, M.216
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:P.40
- Hydrogen bonds: F:S.38, F:S.38
3N8.29: 5 residues within 4Å:- Chain C: L.20, P.22, I.28
- Chain F: P.32, R.33
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain C- Hydrogen bonds: F:R.33, F:R.33
- pi-Cation interactions: F:R.33
- Hydrophobic interactions: C:L.20, C:P.22
- Water bridges: C:R.33
3N8.30: 5 residues within 4Å:- Chain F: P.187, K.193, I.195, A.196, V.201
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:K.193, F:K.193, F:V.201
3N8.31: 7 residues within 4Å:- Chain D: L.160
- Chain E: S.38, P.40
- Chain F: R.150, P.153
- Chain L: P.215, M.216
No protein-ligand interaction detected (PLIP)3N8.33: 4 residues within 4Å:- Chain A: L.5
- Chain F: R.83, V.85, D.224
7 PLIP interactions:1 interactions with chain A, 6 interactions with chain F- Hydrophobic interactions: A:L.5, F:V.85, F:V.85, F:D.224
- Hydrogen bonds: F:R.83
- Water bridges: F:R.83, F:Y.136
3N8.36: 8 residues within 4Å:- Chain A: A.26, G.27, N.28
- Chain F: Y.108, R.109, H.110, K.111, L.119
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:R.109
- Halogen bonds: F:Y.108
3N8.40: 5 residues within 4Å:- Chain G: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:R.167
- Hydrogen bonds: G:R.167
3N8.42: 5 residues within 4Å:- Chain H: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:R.167
- Hydrogen bonds: H:R.167
3N8.44: 7 residues within 4Å:- Chain I: P.187, K.193, I.195, A.196, P.198, V.201
- Ligands: BME.48
3 PLIP interactions:3 interactions with chain I- Hydrophobic interactions: I:K.193, I:K.193, I:V.201
3N8.45: 3 residues within 4Å:- Chain I: R.33
- Chain K: P.22, I.28
5 PLIP interactions:2 interactions with chain K, 3 interactions with chain I- Hydrophobic interactions: K:P.22
- Water bridges: K:R.33
- Hydrogen bonds: I:R.33, I:R.33
- pi-Cation interactions: I:R.33
3N8.46: 8 residues within 4Å:- Chain H: L.160
- Chain I: S.38, I.39, P.40
- Chain K: R.150, P.153
- Chain Q: P.215, M.216
3 PLIP interactions:1 interactions with chain H, 1 interactions with chain I, 1 interactions with chain K- Hydrophobic interactions: H:L.160, I:P.40
- Hydrogen bonds: K:R.150
3N8.50: 9 residues within 4Å:- Chain H: L.23, N.28, P.29, T.30
- Chain I: N.66, F.67, G.124, G.125, V.126
5 PLIP interactions:3 interactions with chain H, 2 interactions with chain I- Hydrogen bonds: H:N.28, H:P.29, H:P.29
- Hydrophobic interactions: I:V.126
- pi-Stacking: I:F.67
3N8.53: 5 residues within 4Å:- Chain J: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain J- Hydrophobic interactions: J:R.167
- Hydrogen bonds: J:R.167
3N8.58: 9 residues within 4Å:- Chain J: L.23, N.28, P.29, T.30
- Chain K: N.66, F.67, G.124, G.125, V.126
4 PLIP interactions:3 interactions with chain J, 1 interactions with chain K- Hydrogen bonds: J:P.29, J:P.29
- Water bridges: J:N.28
- Hydrophobic interactions: K:F.67
3N8.59: 5 residues within 4Å:- Chain K: P.187, K.193, I.195, A.196, V.201
4 PLIP interactions:4 interactions with chain K- Hydrophobic interactions: K:K.193, K:K.193, K:V.201
- Water bridges: K:I.195
3N8.60: 4 residues within 4Å:- Chain K: R.33
- Chain L: L.20, P.22, I.28
5 PLIP interactions:2 interactions with chain L, 3 interactions with chain K- Hydrophobic interactions: L:P.22, L:P.22
- Hydrogen bonds: K:R.33, K:R.33
- pi-Cation interactions: K:R.33
3N8.61: 5 residues within 4Å:- Chain K: N.5, S.6, Q.230, R.231, K.232
4 PLIP interactions:4 interactions with chain K- Hydrophobic interactions: K:Q.230
- Hydrogen bonds: K:Q.230
- Water bridges: K:S.6, K:Q.230
3N8.66: 6 residues within 4Å:- Chain I: R.150
- Chain L: S.38, I.39, P.40
- Chain U: P.215, M.216
3 PLIP interactions:3 interactions with chain L- Hydrophobic interactions: L:P.40
- Hydrogen bonds: L:S.38, L:S.38
3N8.67: 5 residues within 4Å:- Chain I: L.20, P.22, I.28
- Chain L: P.32, R.33
6 PLIP interactions:3 interactions with chain I, 3 interactions with chain L- Hydrophobic interactions: I:L.20, I:P.22
- Water bridges: I:R.33
- Hydrogen bonds: L:R.33, L:R.33
- pi-Cation interactions: L:R.33
3N8.68: 5 residues within 4Å:- Chain L: P.187, K.193, I.195, A.196, V.201
3 PLIP interactions:3 interactions with chain L- Hydrophobic interactions: L:K.193, L:K.193, L:V.201
3N8.69: 7 residues within 4Å:- Chain F: P.215, M.216
- Chain J: L.160
- Chain K: S.38, P.40
- Chain L: R.150, P.153
No protein-ligand interaction detected (PLIP)3N8.71: 4 residues within 4Å:- Chain G: L.5
- Chain L: R.83, V.85, D.224
7 PLIP interactions:6 interactions with chain L, 1 interactions with chain G- Hydrophobic interactions: L:V.85, L:V.85, L:D.224, G:L.5
- Hydrogen bonds: L:R.83
- Water bridges: L:R.83, L:Y.136
3N8.74: 8 residues within 4Å:- Chain G: A.26, G.27, N.28
- Chain L: Y.108, R.109, H.110, K.111, L.119
2 PLIP interactions:2 interactions with chain L- Hydrophobic interactions: L:R.109
- Halogen bonds: L:Y.108
3N8.78: 5 residues within 4Å:- Chain M: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:R.167
- Hydrogen bonds: M:R.167
3N8.80: 5 residues within 4Å:- Chain N: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:R.167
- Hydrogen bonds: N:R.167
3N8.82: 7 residues within 4Å:- Chain O: P.187, K.193, I.195, A.196, P.198, V.201
- Ligands: BME.86
3 PLIP interactions:3 interactions with chain O- Hydrophobic interactions: O:K.193, O:K.193, O:V.201
3N8.83: 3 residues within 4Å:- Chain O: R.33
- Chain Q: P.22, I.28
5 PLIP interactions:2 interactions with chain Q, 3 interactions with chain O- Hydrophobic interactions: Q:P.22
- Water bridges: Q:R.33
- Hydrogen bonds: O:R.33, O:R.33
- pi-Cation interactions: O:R.33
3N8.84: 8 residues within 4Å:- Chain K: P.215, M.216
- Chain N: L.160
- Chain O: S.38, I.39, P.40
- Chain Q: R.150, P.153
3 PLIP interactions:1 interactions with chain N, 1 interactions with chain O, 1 interactions with chain Q- Hydrophobic interactions: N:L.160, O:P.40
- Hydrogen bonds: Q:R.150
3N8.88: 9 residues within 4Å:- Chain N: L.23, N.28, P.29, T.30
- Chain O: N.66, F.67, G.124, G.125, V.126
5 PLIP interactions:3 interactions with chain N, 2 interactions with chain O- Hydrogen bonds: N:N.28, N:P.29, N:P.29
- Hydrophobic interactions: O:V.126
- pi-Stacking: O:F.67
3N8.91: 5 residues within 4Å:- Chain P: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain P- Hydrophobic interactions: P:R.167
- Hydrogen bonds: P:R.167
3N8.96: 9 residues within 4Å:- Chain P: L.23, N.28, P.29, T.30
- Chain Q: N.66, F.67, G.124, G.125, V.126
4 PLIP interactions:1 interactions with chain Q, 3 interactions with chain P- Hydrophobic interactions: Q:F.67
- Hydrogen bonds: P:P.29, P:P.29
- Water bridges: P:N.28
3N8.97: 5 residues within 4Å:- Chain Q: P.187, K.193, I.195, A.196, V.201
4 PLIP interactions:4 interactions with chain Q- Hydrophobic interactions: Q:K.193, Q:K.193, Q:V.201
- Water bridges: Q:I.195
3N8.98: 4 residues within 4Å:- Chain Q: R.33
- Chain R: L.20, P.22, I.28
5 PLIP interactions:3 interactions with chain Q, 2 interactions with chain R- Hydrogen bonds: Q:R.33, Q:R.33
- pi-Cation interactions: Q:R.33
- Hydrophobic interactions: R:P.22, R:P.22
3N8.99: 5 residues within 4Å:- Chain Q: N.5, S.6, Q.230, R.231, K.232
4 PLIP interactions:4 interactions with chain Q- Hydrophobic interactions: Q:Q.230
- Hydrogen bonds: Q:Q.230
- Water bridges: Q:S.6, Q:Q.230
3N8.104: 6 residues within 4Å:- Chain C: P.215, M.216
- Chain O: R.150
- Chain R: S.38, I.39, P.40
3 PLIP interactions:3 interactions with chain R- Hydrophobic interactions: R:P.40
- Hydrogen bonds: R:S.38, R:S.38
3N8.105: 5 residues within 4Å:- Chain O: L.20, P.22, I.28
- Chain R: P.32, R.33
6 PLIP interactions:3 interactions with chain O, 3 interactions with chain R- Hydrophobic interactions: O:L.20, O:P.22
- Water bridges: O:R.33
- Hydrogen bonds: R:R.33, R:R.33
- pi-Cation interactions: R:R.33
3N8.106: 5 residues within 4Å:- Chain R: P.187, K.193, I.195, A.196, V.201
3 PLIP interactions:3 interactions with chain R- Hydrophobic interactions: R:K.193, R:K.193, R:V.201
3N8.107: 7 residues within 4Å:- Chain P: L.160
- Chain Q: S.38, P.40
- Chain R: R.150, P.153
- Chain X: P.215, M.216
No protein-ligand interaction detected (PLIP)3N8.109: 4 residues within 4Å:- Chain M: L.5
- Chain R: R.83, V.85, D.224
8 PLIP interactions:7 interactions with chain R, 1 interactions with chain M- Hydrophobic interactions: R:V.85, R:V.85, R:D.224, M:L.5
- Hydrogen bonds: R:R.83
- Water bridges: R:R.83, R:Y.136, R:Y.136
3N8.112: 8 residues within 4Å:- Chain M: A.26, G.27, N.28
- Chain R: Y.108, R.109, H.110, K.111, L.119
2 PLIP interactions:2 interactions with chain R- Hydrophobic interactions: R:R.109
- Halogen bonds: R:Y.108
3N8.116: 5 residues within 4Å:- Chain S: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain S- Hydrophobic interactions: S:R.167
- Hydrogen bonds: S:R.167
3N8.118: 5 residues within 4Å:- Chain T: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain T- Hydrophobic interactions: T:R.167
- Hydrogen bonds: T:R.167
3N8.120: 7 residues within 4Å:- Chain U: P.187, K.193, I.195, A.196, P.198, V.201
- Ligands: BME.124
3 PLIP interactions:3 interactions with chain U- Hydrophobic interactions: U:K.193, U:K.193, U:V.201
3N8.121: 3 residues within 4Å:- Chain U: R.33
- Chain W: P.22, I.28
5 PLIP interactions:3 interactions with chain U, 2 interactions with chain W- Hydrogen bonds: U:R.33, U:R.33
- pi-Cation interactions: U:R.33
- Hydrophobic interactions: W:P.22
- Water bridges: W:R.33
3N8.122: 8 residues within 4Å:- Chain E: P.215, M.216
- Chain T: L.160
- Chain U: S.38, I.39, P.40
- Chain W: R.150, P.153
3 PLIP interactions:1 interactions with chain T, 1 interactions with chain U, 1 interactions with chain W- Hydrophobic interactions: T:L.160, U:P.40
- Hydrogen bonds: W:R.150
3N8.126: 9 residues within 4Å:- Chain T: L.23, N.28, P.29, T.30
- Chain U: N.66, F.67, G.124, G.125, V.126
5 PLIP interactions:2 interactions with chain U, 3 interactions with chain T- Hydrophobic interactions: U:V.126
- pi-Stacking: U:F.67
- Hydrogen bonds: T:N.28, T:P.29, T:P.29
3N8.129: 5 residues within 4Å:- Chain V: N.152, P.164, R.167, E.168, I.171
2 PLIP interactions:2 interactions with chain V- Hydrophobic interactions: V:R.167
- Hydrogen bonds: V:R.167
3N8.134: 9 residues within 4Å:- Chain V: L.23, N.28, P.29, T.30
- Chain W: N.66, F.67, G.124, G.125, V.126
4 PLIP interactions:3 interactions with chain V, 1 interactions with chain W- Hydrogen bonds: V:P.29, V:P.29
- Water bridges: V:N.28
- Hydrophobic interactions: W:F.67
3N8.135: 5 residues within 4Å:- Chain W: P.187, K.193, I.195, A.196, V.201
4 PLIP interactions:4 interactions with chain W- Hydrophobic interactions: W:K.193, W:K.193, W:V.201
- Water bridges: W:I.195
3N8.136: 4 residues within 4Å:- Chain W: R.33
- Chain X: L.20, P.22, I.28
5 PLIP interactions:2 interactions with chain X, 3 interactions with chain W- Hydrophobic interactions: X:P.22, X:P.22
- Hydrogen bonds: W:R.33, W:R.33
- pi-Cation interactions: W:R.33
3N8.137: 5 residues within 4Å:- Chain W: N.5, S.6, Q.230, R.231, K.232
4 PLIP interactions:4 interactions with chain W- Hydrophobic interactions: W:Q.230
- Hydrogen bonds: W:Q.230
- Water bridges: W:S.6, W:Q.230
3N8.142: 6 residues within 4Å:- Chain I: P.215, M.216
- Chain U: R.150
- Chain X: S.38, I.39, P.40
3 PLIP interactions:3 interactions with chain X- Hydrophobic interactions: X:P.40
- Hydrogen bonds: X:S.38, X:S.38
3N8.143: 5 residues within 4Å:- Chain U: L.20, P.22, I.28
- Chain X: P.32, R.33
6 PLIP interactions:3 interactions with chain U, 3 interactions with chain X- Hydrophobic interactions: U:L.20, U:P.22
- Water bridges: U:R.33
- Hydrogen bonds: X:R.33, X:R.33
- pi-Cation interactions: X:R.33
3N8.144: 5 residues within 4Å:- Chain X: P.187, K.193, I.195, A.196, V.201
3 PLIP interactions:3 interactions with chain X- Hydrophobic interactions: X:K.193, X:K.193, X:V.201
3N8.145: 7 residues within 4Å:- Chain R: P.215, M.216
- Chain V: L.160
- Chain W: S.38, P.40
- Chain X: R.150, P.153
No protein-ligand interaction detected (PLIP)3N8.147: 4 residues within 4Å:- Chain S: L.5
- Chain X: R.83, V.85, D.224
8 PLIP interactions:7 interactions with chain X, 1 interactions with chain S- Hydrophobic interactions: X:V.85, X:V.85, X:D.224, S:L.5
- Hydrogen bonds: X:R.83
- Water bridges: X:R.83, X:Y.136, X:Y.136
3N8.150: 8 residues within 4Å:- Chain S: A.26, G.27, N.28
- Chain X: Y.108, R.109, H.110, K.111, L.119
2 PLIP interactions:2 interactions with chain X- Hydrophobic interactions: X:R.109
- Halogen bonds: X:Y.108
- 12 x FE: FE (III) ION(Non-covalent)
FE.5: 3 residues within 4Å:- Chain C: Y.108, H.160, H.162
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:Y.108, C:H.160, C:H.162, H2O.15
FE.19: 4 residues within 4Å:- Chain E: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:Y.108, E:Y.147, E:H.160, E:H.162, H2O.28
FE.27: 5 residues within 4Å:- Chain F: Y.108, Y.147, H.160, H.162
- Ligands: 3N9.38
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:Y.108, F:Y.147, F:H.160, F:H.162
FE.43: 3 residues within 4Å:- Chain I: Y.108, H.160, H.162
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:Y.108, I:H.160, I:H.162, H2O.50
FE.57: 4 residues within 4Å:- Chain K: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:Y.108, K:Y.147, K:H.160, K:H.162, H2O.62
FE.65: 5 residues within 4Å:- Chain L: Y.108, Y.147, H.160, H.162
- Ligands: 3N9.76
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:Y.108, L:Y.147, L:H.160, L:H.162
FE.81: 3 residues within 4Å:- Chain O: Y.108, H.160, H.162
4 PLIP interactions:3 interactions with chain O, 1 Ligand-Water interactions- Metal complexes: O:Y.108, O:H.160, O:H.162, H2O.84
FE.95: 4 residues within 4Å:- Chain Q: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: Q:Y.108, Q:Y.147, Q:H.160, Q:H.162, H2O.96
FE.103: 5 residues within 4Å:- Chain R: Y.108, Y.147, H.160, H.162
- Ligands: 3N9.114
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:Y.108, R:Y.147, R:H.160, R:H.162
FE.119: 3 residues within 4Å:- Chain U: Y.108, H.160, H.162
4 PLIP interactions:3 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: U:Y.108, U:H.160, U:H.162, H2O.118
FE.133: 4 residues within 4Å:- Chain W: Y.108, Y.147, H.160, H.162
5 PLIP interactions:4 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: W:Y.108, W:Y.147, W:H.160, W:H.162, H2O.131
FE.141: 5 residues within 4Å:- Chain X: Y.108, Y.147, H.160, H.162
- Ligands: 3N9.152
4 PLIP interactions:4 interactions with chain X- Metal complexes: X:Y.108, X:Y.147, X:H.160, X:H.162
- 32 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.9: 3 residues within 4Å:- Chain C: T.21, P.22, D.23
Ligand excluded by PLIPBME.10: 4 residues within 4Å:- Chain C: I.186, Q.202, I.205
- Ligands: 3N8.6
Ligand excluded by PLIPBME.14: 5 residues within 4Å:- Chain C: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.16: 6 residues within 4Å:- Chain D: E.168, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPBME.24: 5 residues within 4Å:- Chain E: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.32: 4 residues within 4Å:- Chain F: S.6, Q.230, R.231, K.232
Ligand excluded by PLIPBME.34: 4 residues within 4Å:- Chain F: Q.203, R.222, F.223, D.224
Ligand excluded by PLIPBME.35: 5 residues within 4Å:- Chain F: G.182, D.183, I.186, P.187, I.205
Ligand excluded by PLIPBME.47: 3 residues within 4Å:- Chain I: T.21, P.22, D.23
Ligand excluded by PLIPBME.48: 4 residues within 4Å:- Chain I: I.186, Q.202, I.205
- Ligands: 3N8.44
Ligand excluded by PLIPBME.52: 5 residues within 4Å:- Chain I: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.54: 6 residues within 4Å:- Chain J: E.168, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPBME.62: 5 residues within 4Å:- Chain K: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.70: 4 residues within 4Å:- Chain L: S.6, Q.230, R.231, K.232
Ligand excluded by PLIPBME.72: 4 residues within 4Å:- Chain L: Q.203, R.222, F.223, D.224
Ligand excluded by PLIPBME.73: 5 residues within 4Å:- Chain L: G.182, D.183, I.186, P.187, I.205
Ligand excluded by PLIPBME.85: 3 residues within 4Å:- Chain O: T.21, P.22, D.23
Ligand excluded by PLIPBME.86: 4 residues within 4Å:- Chain O: I.186, Q.202, I.205
- Ligands: 3N8.82
Ligand excluded by PLIPBME.90: 5 residues within 4Å:- Chain O: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.92: 6 residues within 4Å:- Chain P: E.168, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPBME.100: 5 residues within 4Å:- Chain Q: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.108: 4 residues within 4Å:- Chain R: S.6, Q.230, R.231, K.232
Ligand excluded by PLIPBME.110: 4 residues within 4Å:- Chain R: Q.203, R.222, F.223, D.224
Ligand excluded by PLIPBME.111: 5 residues within 4Å:- Chain R: G.182, D.183, I.186, P.187, I.205
Ligand excluded by PLIPBME.123: 3 residues within 4Å:- Chain U: T.21, P.22, D.23
Ligand excluded by PLIPBME.124: 4 residues within 4Å:- Chain U: I.186, Q.202, I.205
- Ligands: 3N8.120
Ligand excluded by PLIPBME.128: 5 residues within 4Å:- Chain U: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.130: 6 residues within 4Å:- Chain V: E.168, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPBME.138: 5 residues within 4Å:- Chain W: Q.203, I.205, R.222, F.223, D.224
Ligand excluded by PLIPBME.146: 4 residues within 4Å:- Chain X: S.6, Q.230, R.231, K.232
Ligand excluded by PLIPBME.148: 4 residues within 4Å:- Chain X: Q.203, R.222, F.223, D.224
Ligand excluded by PLIPBME.149: 5 residues within 4Å:- Chain X: G.182, D.183, I.186, P.187, I.205
Ligand excluded by PLIP- 12 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.11: 3 residues within 4Å:- Chain C: R.109, D.120, P.121
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.120
BCT.13: 6 residues within 4Å:- Chain B: N.28
- Chain C: Y.108, R.109, H.110, K.111, L.119
No protein-ligand interaction detected (PLIP)BCT.37: 2 residues within 4Å:- Chain F: R.83
- Chain K: K.90
4 PLIP interactions:1 interactions with chain K, 3 interactions with chain F- Hydrogen bonds: K:K.90, F:R.83, F:R.83
- Water bridges: F:D.134
BCT.49: 3 residues within 4Å:- Chain I: R.109, D.120, P.121
1 PLIP interactions:1 interactions with chain I- Hydrogen bonds: I:D.120
BCT.51: 6 residues within 4Å:- Chain H: N.28
- Chain I: Y.108, R.109, H.110, K.111, L.119
No protein-ligand interaction detected (PLIP)BCT.75: 2 residues within 4Å:- Chain E: K.90
- Chain L: R.83
4 PLIP interactions:3 interactions with chain L, 1 interactions with chain E- Hydrogen bonds: L:R.83, L:R.83, E:K.90
- Water bridges: L:D.134
BCT.87: 3 residues within 4Å:- Chain O: R.109, D.120, P.121
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:D.120
BCT.89: 6 residues within 4Å:- Chain N: N.28
- Chain O: Y.108, R.109, H.110, K.111, L.119
No protein-ligand interaction detected (PLIP)BCT.113: 2 residues within 4Å:- Chain R: R.83
- Chain W: K.90
3 PLIP interactions:1 interactions with chain W, 2 interactions with chain R- Hydrogen bonds: W:K.90, R:R.83, R:R.83
BCT.125: 3 residues within 4Å:- Chain U: R.109, D.120, P.121
1 PLIP interactions:1 interactions with chain U- Hydrogen bonds: U:D.120
BCT.127: 6 residues within 4Å:- Chain T: N.28
- Chain U: Y.108, R.109, H.110, K.111, L.119
No protein-ligand interaction detected (PLIP)BCT.151: 2 residues within 4Å:- Chain Q: K.90
- Chain X: R.83
3 PLIP interactions:2 interactions with chain X, 1 interactions with chain Q- Hydrogen bonds: X:R.83, X:R.83, Q:K.90
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.18: 5 residues within 4Å:- Chain B: Q.163, Q.165
- Chain D: H.61, L.62, R.64
7 PLIP interactions:5 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:L.62, B:Q.163, B:Q.165
- Water bridges: D:R.64, D:R.64
- Salt bridges: D:H.61, D:R.64
SO4.56: 5 residues within 4Å:- Chain H: Q.163, Q.165
- Chain J: H.61, L.62, R.64
7 PLIP interactions:5 interactions with chain J, 2 interactions with chain H- Hydrogen bonds: J:L.62, H:Q.163, H:Q.165
- Water bridges: J:R.64, J:R.64
- Salt bridges: J:H.61, J:R.64
SO4.94: 5 residues within 4Å:- Chain N: Q.163, Q.165
- Chain P: H.61, L.62, R.64
7 PLIP interactions:5 interactions with chain P, 2 interactions with chain N- Hydrogen bonds: P:L.62, N:Q.163, N:Q.165
- Water bridges: P:R.64, P:R.64
- Salt bridges: P:H.61, P:R.64
SO4.132: 5 residues within 4Å:- Chain T: Q.163, Q.165
- Chain V: H.61, L.62, R.64
7 PLIP interactions:5 interactions with chain V, 2 interactions with chain T- Hydrogen bonds: V:L.62, T:Q.163, T:Q.165
- Water bridges: V:R.64, V:R.64
- Salt bridges: V:H.61, V:R.64
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.25: 3 residues within 4Å:- Chain E: T.21, P.22, D.23
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.21, E:D.23
NA.63: 3 residues within 4Å:- Chain K: T.21, P.22, D.23
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:T.21, K:D.23
NA.101: 3 residues within 4Å:- Chain Q: T.21, P.22, D.23
2 PLIP interactions:2 interactions with chain Q- Hydrogen bonds: Q:T.21, Q:D.23
NA.139: 3 residues within 4Å:- Chain W: T.21, P.22, D.23
2 PLIP interactions:2 interactions with chain W- Hydrogen bonds: W:T.21, W:D.23
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.26: 9 residues within 4Å:- Chain E: R.7, F.8, I.10, Q.41, R.231, E.236
- Chain L: A.213, N.214, P.215
10 PLIP interactions:9 interactions with chain E, 1 interactions with chain L- Hydrogen bonds: E:F.8, E:Q.41, E:R.231, E:E.236, E:E.236
- Water bridges: E:R.7, E:I.10, E:Q.41, E:Q.41, L:N.214
GOL.64: 9 residues within 4Å:- Chain F: A.213, N.214, P.215
- Chain K: R.7, F.8, I.10, Q.41, R.231, E.236
10 PLIP interactions:9 interactions with chain K, 1 interactions with chain F- Hydrogen bonds: K:F.8, K:Q.41, K:R.231, K:E.236, K:E.236
- Water bridges: K:R.7, K:I.10, K:Q.41, K:Q.41, F:N.214
GOL.102: 9 residues within 4Å:- Chain Q: R.7, F.8, I.10, Q.41, R.231, E.236
- Chain X: A.213, N.214, P.215
9 PLIP interactions:8 interactions with chain Q, 1 interactions with chain X- Hydrogen bonds: Q:F.8, Q:Q.41, Q:R.231, Q:E.236
- Water bridges: Q:R.7, Q:I.10, Q:Q.41, Q:Q.41, X:N.214
GOL.140: 9 residues within 4Å:- Chain R: A.213, N.214, P.215
- Chain W: R.7, F.8, I.10, Q.41, R.231, E.236
9 PLIP interactions:8 interactions with chain W, 1 interactions with chain R- Hydrogen bonds: W:F.8, W:Q.41, W:R.231, W:E.236
- Water bridges: W:R.7, W:I.10, W:Q.41, W:Q.41, R:N.214
- 4 x 3N9: (6S)-4-fluoro-6-hydroperoxy-6-hydroxycyclohexa-2,4-dien-1-one(Non-covalent)
3N9.38: 13 residues within 4Å:- Chain A: T.12, G.14, P.15, Y.16
- Chain F: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.27
7 PLIP interactions:5 interactions with chain F, 2 interactions with chain A- Hydrophobic interactions: F:Y.147, F:W.149, F:I.191
- Hydrogen bonds: F:R.157, F:Q.177
- Water bridges: A:Y.16, A:Y.16
3N9.76: 13 residues within 4Å:- Chain G: T.12, G.14, P.15, Y.16
- Chain L: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.65
7 PLIP interactions:5 interactions with chain L, 2 interactions with chain G- Hydrophobic interactions: L:Y.147, L:W.149, L:I.191
- Hydrogen bonds: L:R.157, L:Q.177
- Water bridges: G:Y.16, G:Y.16
3N9.114: 13 residues within 4Å:- Chain M: T.12, G.14, P.15, Y.16
- Chain R: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.103
7 PLIP interactions:5 interactions with chain R, 2 interactions with chain M- Hydrophobic interactions: R:Y.147, R:W.149, R:I.191
- Hydrogen bonds: R:R.157, R:Q.177
- Water bridges: M:Y.16, M:Y.16
3N9.152: 13 residues within 4Å:- Chain S: T.12, G.14, P.15, Y.16
- Chain X: Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.141
7 PLIP interactions:2 interactions with chain S, 5 interactions with chain X- Water bridges: S:Y.16, S:Y.16
- Hydrophobic interactions: X:Y.147, X:W.149, X:I.191
- Hydrogen bonds: X:R.157, X:Q.177
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Knoot, C.J. et al., Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2014-12-31
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABDGHJMNPSTV
Protocatechuate 3,4-dioxygenase beta chain: CEFIKLOQRUWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
ED
CG
AH
EJ
CM
AN
EP
CS
AT
EV
CC
FE
DF
BI
FK
DL
BO
FQ
DR
BU
FW
DX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 68 x 3N8: 4-fluorobenzene-1,2-diol(Non-covalent)
- 12 x FE: FE (III) ION(Non-covalent)
- 32 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 12 x BCT: BICARBONATE ION(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 3N9: (6S)-4-fluoro-6-hydroperoxy-6-hydroxycyclohexa-2,4-dien-1-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Knoot, C.J. et al., Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2014-12-31
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABDGHJMNPSTV
Protocatechuate 3,4-dioxygenase beta chain: CEFIKLOQRUWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
ED
CG
AH
EJ
CM
AN
EP
CS
AT
EV
CC
FE
DF
BI
FK
DL
BO
FQ
DR
BU
FW
DX
B