- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 28 x SO4: SULFATE ION(Non-functional Binders)
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 6 residues within 4Å:- Chain A: E.168, T.169, I.171, R.184, D.186, R.188
Ligand excluded by PLIPGOL.5: 8 residues within 4Å:- Chain B: E.168, I.171, A.172, K.173, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain C: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.9: 4 residues within 4Å:- Chain D: R.109, L.119, D.120, P.121
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain D: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.21: 7 residues within 4Å:- Chain E: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain U: I.2
Ligand excluded by PLIPGOL.34: 6 residues within 4Å:- Chain G: E.168, T.169, I.171, R.184, D.186, R.188
Ligand excluded by PLIPGOL.37: 8 residues within 4Å:- Chain H: E.168, I.171, A.172, K.173, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.39: 6 residues within 4Å:- Chain I: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.41: 4 residues within 4Å:- Chain J: R.109, L.119, D.120, P.121
Ligand excluded by PLIPGOL.43: 6 residues within 4Å:- Chain J: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.53: 7 residues within 4Å:- Chain K: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain O: I.2
Ligand excluded by PLIPGOL.66: 6 residues within 4Å:- Chain M: E.168, T.169, I.171, R.184, D.186, R.188
Ligand excluded by PLIPGOL.69: 8 residues within 4Å:- Chain N: E.168, I.171, A.172, K.173, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.71: 6 residues within 4Å:- Chain O: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.73: 4 residues within 4Å:- Chain P: R.109, L.119, D.120, P.121
Ligand excluded by PLIPGOL.75: 6 residues within 4Å:- Chain P: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.85: 7 residues within 4Å:- Chain I: I.2
- Chain Q: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.98: 6 residues within 4Å:- Chain S: E.168, T.169, I.171, R.184, D.186, R.188
Ligand excluded by PLIPGOL.101: 8 residues within 4Å:- Chain T: E.168, I.171, A.172, K.173, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.103: 6 residues within 4Å:- Chain U: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.105: 4 residues within 4Å:- Chain V: R.109, L.119, D.120, P.121
Ligand excluded by PLIPGOL.107: 6 residues within 4Å:- Chain V: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.117: 7 residues within 4Å:- Chain C: I.2
- Chain W: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIP- 44 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.3: 8 residues within 4Å:- Chain A: Y.56, D.57, G.60, R.188, I.189, Q.190, G.191, E.192
Ligand excluded by PLIPBME.12: 6 residues within 4Å:- Chain A: R.31
- Chain D: D.60, N.66, V.126, G.127, R.128
Ligand excluded by PLIPBME.13: 3 residues within 4Å:- Chain D: F.56, C.129, L.130
Ligand excluded by PLIPBME.14: 8 residues within 4Å:- Chain A: T.12, G.14, P.15, R.133
- Chain D: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.15: 5 residues within 4Å:- Chain D: E.181, G.182, Q.202, I.205, K.207
Ligand excluded by PLIPBME.19: 3 residues within 4Å:- Chain E: F.56, C.129, L.130
Ligand excluded by PLIPBME.25: 8 residues within 4Å:- Chain B: T.12, G.14, P.15, R.133
- Chain E: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.26: 3 residues within 4Å:- Chain E: H.234, F.235, E.236
Ligand excluded by PLIPBME.30: 9 residues within 4Å:- Chain C: T.12, G.14, P.15, R.133
- Chain F: Y.24, T.26, W.149, I.191
- Ligands: CO3.29
Ligand excluded by PLIPBME.31: 4 residues within 4Å:- Chain F: H.234, F.235
- Chain W: H.61, S.138
Ligand excluded by PLIPBME.32: 4 residues within 4Å:- Chain C: R.31, D.32
- Chain F: G.57, D.60
Ligand excluded by PLIPBME.35: 8 residues within 4Å:- Chain G: Y.56, D.57, G.60, R.188, I.189, Q.190, G.191, E.192
Ligand excluded by PLIPBME.44: 6 residues within 4Å:- Chain G: R.31
- Chain J: D.60, N.66, V.126, G.127, R.128
Ligand excluded by PLIPBME.45: 3 residues within 4Å:- Chain J: F.56, C.129, L.130
Ligand excluded by PLIPBME.46: 8 residues within 4Å:- Chain G: T.12, G.14, P.15, R.133
- Chain J: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.47: 5 residues within 4Å:- Chain J: E.181, G.182, Q.202, I.205, K.207
Ligand excluded by PLIPBME.51: 3 residues within 4Å:- Chain K: F.56, C.129, L.130
Ligand excluded by PLIPBME.57: 8 residues within 4Å:- Chain H: T.12, G.14, P.15, R.133
- Chain K: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.58: 3 residues within 4Å:- Chain K: H.234, F.235, E.236
Ligand excluded by PLIPBME.62: 9 residues within 4Å:- Chain I: T.12, G.14, P.15, R.133
- Chain L: Y.24, T.26, W.149, I.191
- Ligands: CO3.61
Ligand excluded by PLIPBME.63: 4 residues within 4Å:- Chain L: H.234, F.235
- Chain Q: H.61, S.138
Ligand excluded by PLIPBME.64: 4 residues within 4Å:- Chain I: R.31, D.32
- Chain L: G.57, D.60
Ligand excluded by PLIPBME.67: 8 residues within 4Å:- Chain M: Y.56, D.57, G.60, R.188, I.189, Q.190, G.191, E.192
Ligand excluded by PLIPBME.76: 6 residues within 4Å:- Chain M: R.31
- Chain P: D.60, N.66, V.126, G.127, R.128
Ligand excluded by PLIPBME.77: 3 residues within 4Å:- Chain P: F.56, C.129, L.130
Ligand excluded by PLIPBME.78: 8 residues within 4Å:- Chain M: T.12, G.14, P.15, R.133
- Chain P: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.79: 5 residues within 4Å:- Chain P: E.181, G.182, Q.202, I.205, K.207
Ligand excluded by PLIPBME.83: 3 residues within 4Å:- Chain Q: F.56, C.129, L.130
Ligand excluded by PLIPBME.89: 8 residues within 4Å:- Chain N: T.12, G.14, P.15, R.133
- Chain Q: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.90: 3 residues within 4Å:- Chain Q: H.234, F.235, E.236
Ligand excluded by PLIPBME.94: 9 residues within 4Å:- Chain O: T.12, G.14, P.15, R.133
- Chain R: Y.24, T.26, W.149, I.191
- Ligands: CO3.93
Ligand excluded by PLIPBME.95: 4 residues within 4Å:- Chain K: H.61, S.138
- Chain R: H.234, F.235
Ligand excluded by PLIPBME.96: 4 residues within 4Å:- Chain O: R.31, D.32
- Chain R: G.57, D.60
Ligand excluded by PLIPBME.99: 8 residues within 4Å:- Chain S: Y.56, D.57, G.60, R.188, I.189, Q.190, G.191, E.192
Ligand excluded by PLIPBME.108: 6 residues within 4Å:- Chain S: R.31
- Chain V: D.60, N.66, V.126, G.127, R.128
Ligand excluded by PLIPBME.109: 3 residues within 4Å:- Chain V: F.56, C.129, L.130
Ligand excluded by PLIPBME.110: 8 residues within 4Å:- Chain S: T.12, G.14, P.15, R.133
- Chain V: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.111: 5 residues within 4Å:- Chain V: E.181, G.182, Q.202, I.205, K.207
Ligand excluded by PLIPBME.115: 3 residues within 4Å:- Chain W: F.56, C.129, L.130
Ligand excluded by PLIPBME.121: 8 residues within 4Å:- Chain T: T.12, G.14, P.15, R.133
- Chain W: Y.24, T.26, W.149, I.191
Ligand excluded by PLIPBME.122: 3 residues within 4Å:- Chain W: H.234, F.235, E.236
Ligand excluded by PLIPBME.126: 9 residues within 4Å:- Chain U: T.12, G.14, P.15, R.133
- Chain X: Y.24, T.26, W.149, I.191
- Ligands: CO3.125
Ligand excluded by PLIPBME.127: 4 residues within 4Å:- Chain E: H.61, S.138
- Chain X: H.234, F.235
Ligand excluded by PLIPBME.128: 4 residues within 4Å:- Chain U: R.31, D.32
- Chain X: G.57, D.60
Ligand excluded by PLIP- 12 x FE: FE (III) ION(Non-covalent)
FE.10: 5 residues within 4Å:- Chain D: Y.108, H.147, H.160, Y.162
- Ligands: CO3.16
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:Y.108, D:H.147, D:H.160, D:Y.162
FE.20: 5 residues within 4Å:- Chain E: Y.108, H.147, H.160, Y.162
- Ligands: CO3.24
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:Y.108, E:H.147, E:H.160, E:Y.162
FE.28: 5 residues within 4Å:- Chain F: Y.108, H.147, H.160, Y.162
- Ligands: CO3.29
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:Y.108, F:H.147, F:H.160, F:Y.162
FE.42: 5 residues within 4Å:- Chain J: Y.108, H.147, H.160, Y.162
- Ligands: CO3.48
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:Y.108, J:H.147, J:H.160, J:Y.162
FE.52: 5 residues within 4Å:- Chain K: Y.108, H.147, H.160, Y.162
- Ligands: CO3.56
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:Y.108, K:H.147, K:H.160, K:Y.162
FE.60: 5 residues within 4Å:- Chain L: Y.108, H.147, H.160, Y.162
- Ligands: CO3.61
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:Y.108, L:H.147, L:H.160, L:Y.162
FE.74: 5 residues within 4Å:- Chain P: Y.108, H.147, H.160, Y.162
- Ligands: CO3.80
4 PLIP interactions:4 interactions with chain P- Metal complexes: P:Y.108, P:H.147, P:H.160, P:Y.162
FE.84: 5 residues within 4Å:- Chain Q: Y.108, H.147, H.160, Y.162
- Ligands: CO3.88
4 PLIP interactions:4 interactions with chain Q- Metal complexes: Q:Y.108, Q:H.147, Q:H.160, Q:Y.162
FE.92: 5 residues within 4Å:- Chain R: Y.108, H.147, H.160, Y.162
- Ligands: CO3.93
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:Y.108, R:H.147, R:H.160, R:Y.162
FE.106: 5 residues within 4Å:- Chain V: Y.108, H.147, H.160, Y.162
- Ligands: CO3.112
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:Y.108, V:H.147, V:H.160, V:Y.162
FE.116: 5 residues within 4Å:- Chain W: Y.108, H.147, H.160, Y.162
- Ligands: CO3.120
4 PLIP interactions:4 interactions with chain W- Metal complexes: W:Y.108, W:H.147, W:H.160, W:Y.162
FE.124: 5 residues within 4Å:- Chain X: Y.108, H.147, H.160, Y.162
- Ligands: CO3.125
4 PLIP interactions:4 interactions with chain X- Metal complexes: X:Y.108, X:H.147, X:H.160, X:Y.162
- 20 x CO3: CARBONATE ION(Non-functional Binders)
CO3.16: 8 residues within 4Å:- Chain A: P.15, Y.16
- Chain D: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.10
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.157
CO3.22: 6 residues within 4Å:- Chain E: R.150, G.152, P.153
- Chain F: S.38, I.39, P.40
No protein-ligand interaction detected (PLIP)CO3.23: 4 residues within 4Å:- Chain D: L.20, P.22, I.28
- Chain E: R.33
No protein-ligand interaction detected (PLIP)CO3.24: 8 residues within 4Å:- Chain B: P.15, Y.16
- Chain E: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.20
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:R.157
CO3.29: 9 residues within 4Å:- Chain C: P.15, Y.16
- Chain F: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.28, BME.30
No protein-ligand interaction detected (PLIP)CO3.48: 8 residues within 4Å:- Chain G: P.15, Y.16
- Chain J: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.42
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:R.157
CO3.54: 6 residues within 4Å:- Chain K: R.150, G.152, P.153
- Chain L: S.38, I.39, P.40
No protein-ligand interaction detected (PLIP)CO3.55: 4 residues within 4Å:- Chain J: L.20, P.22, I.28
- Chain K: R.33
No protein-ligand interaction detected (PLIP)CO3.56: 8 residues within 4Å:- Chain H: P.15, Y.16
- Chain K: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.52
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:R.157
CO3.61: 9 residues within 4Å:- Chain I: P.15, Y.16
- Chain L: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.60, BME.62
3 PLIP interactions:2 interactions with chain I, 1 interactions with chain L- Water bridges: I:Y.16, I:Y.16, L:H.147
CO3.80: 8 residues within 4Å:- Chain M: P.15, Y.16
- Chain P: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.74
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:R.157
CO3.86: 6 residues within 4Å:- Chain Q: R.150, G.152, P.153
- Chain R: S.38, I.39, P.40
No protein-ligand interaction detected (PLIP)CO3.87: 4 residues within 4Å:- Chain P: L.20, P.22, I.28
- Chain Q: R.33
No protein-ligand interaction detected (PLIP)CO3.88: 8 residues within 4Å:- Chain N: P.15, Y.16
- Chain Q: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.84
1 PLIP interactions:1 interactions with chain Q- Hydrogen bonds: Q:R.157
CO3.93: 9 residues within 4Å:- Chain O: P.15, Y.16
- Chain R: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.92, BME.94
1 PLIP interactions:1 interactions with chain O- Water bridges: O:Y.16
CO3.112: 8 residues within 4Å:- Chain S: P.15, Y.16
- Chain V: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.106
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:R.157
CO3.118: 6 residues within 4Å:- Chain W: R.150, G.152, P.153
- Chain X: S.38, I.39, P.40
No protein-ligand interaction detected (PLIP)CO3.119: 4 residues within 4Å:- Chain V: L.20, P.22, I.28
- Chain W: R.33
No protein-ligand interaction detected (PLIP)CO3.120: 8 residues within 4Å:- Chain T: P.15, Y.16
- Chain W: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.116
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:R.157
CO3.125: 9 residues within 4Å:- Chain U: P.15, Y.16
- Chain X: Y.108, H.147, R.157, H.160, Y.162
- Ligands: FE.124, BME.126
1 PLIP interactions:1 interactions with chain U- Water bridges: U:Y.16
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2011-06-01
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CD
ME
NF
OJ
MK
NL
OP
MQ
NR
OV
MW
NX
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 28 x SO4: SULFATE ION(Non-functional Binders)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- 44 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 12 x FE: FE (III) ION(Non-covalent)
- 20 x CO3: CARBONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2011-06-01
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CD
ME
NF
OJ
MK
NL
OP
MQ
NR
OV
MW
NX
O