SMTL ID : 3pwu.1

An immmunodominant CTL epitope from rinderpest virus presented by cattle MHC class I molecule N*01801(BoLA-A11)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- PRO- ALA- TYR- GLY- VAL- LEU- THR- ILE: IPA from Hemagglutinin glycoprotein(Non-covalent)

ILE-PRO-ALA-TYR-GLY-VAL-LEU-THR-ILE.1: 26 residues within 4Å: Chain A: Y.6, Y.8, Y.58, R.61, N.62, I.65, Y.66, T.69, I.72, A.75, N.76, T.79, Y.83, F.94, Y.98, M.113, Y.122, T.142, K.145, W.146, A.149, E.151, Q.155, Y.158, R.162, Y.170 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.58, A:I.65, A:I.65, A:Y.66, A:T.79, A:F.94, A:Y.98, A:T.142, A:A.149, A:Y.158 Hydrogen bonds: A:Y.6, A:Y.8, A:T.69, A:N.76, A:Y.98, A:Y.98, A:T.142, A:K.145, A:E.151, A:Y.158, A:R.162, A:Y.170, A:Y.170 Water bridges: A:T.69, A:N.76, A:Y.83, A:Y.83, A:Q.155, A:Q.155 Salt bridges: A:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Two distinct conformations of a rinderpest virus epitope presented by bovine major histocompatibility complex class I N*01801: a host strategy to present featured peptides. J.Virol. (2011)

Release Date

2011-08-24

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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