SMTL ID : 4nsk.1

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH LCMV-DERIVED GP33 ALTERED PEPTIDE ligand V3P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- ALA- PRO- TYR- ASN- PHE- ALA- THR- MET: Pre-glycoprotein polyprotein GP(Non-covalent)

LYS-ALA-PRO-TYR-ASN-PHE-ALA-THR-MET.1: 30 residues within 4Å: Chain A: M.5, Y.7, E.9, Y.45, Y.59, R.62, E.63, K.66, Q.70, W.73, V.76, S.77, N.80, Y.84, L.95, Q.97, S.99, F.116, Y.123, I.124, T.143, K.146, W.147, S.150, H.155, Y.156, Y.159, E.163, W.167, Y.171 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:W.73, A:V.76, A:H.155, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:R.62, A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Q.97, A:Q.97, A:K.146, A:K.146, A:Y.156, A:Y.171, A:Y.171 Water bridges: A:E.163 Salt bridges: A:K.146 pi-Stacking: A:Y.156 pi-Cation interactions: A:H.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allerbring, E.B. et al., CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH LCMV-DERIVED GP33 ALTERED PEPTIDE ligand V3P. TO BE PUBLISHED

Release Date

2014-01-01

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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