SMTL ID : 4zuu.1

Crystal structure of Equine MHC I(Eqca-N*00602) in complexed with equine infectious anaemia virus (EIAV) derived peptide Gag-CF9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CYS- THR- SER- GLU- GLU- MET- ASN- ALA- PHE: CYS-THR-SER-GLU-GLU-MET-ASN-ALA-PHE(Non-covalent)

CYS-THR-SER-GLU-GLU-MET-ASN-ALA-PHE.1: 25 residues within 4Å: Chain A: Y.7, Y.9, M.45, R.62, E.63, N.66, N.73, F.74, G.77, T.80, L.81, Y.84, L.95, R.97, Y.99, R.114, D.116, T.143, K.146, R.147, E.152, Q.155, Y.159, W.167, Y.171 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.7, A:L.81, A:L.95, A:Q.155 Hydrogen bonds: A:Y.7, A:R.62, A:E.63, A:R.97, A:R.97, A:Y.99, A:R.114, A:T.143, A:R.147, A:E.152, A:Y.159 Water bridges: A:N.73, A:Y.99, A:Y.99 Salt bridges: A:R.62, A:R.114, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, S. et al., Structural Illumination of Equine MHC Class I Molecules Highlights Unconventional Epitope Presentation Manner That Is Evolved in Equine Leukocyte Antigen Alleles. J Immunol. (2016)

Release Date

2016-04-06

Peptides

Classical MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Classical MHC class I antigen

Beta-2-microglobulin

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