SMTL ID : 5co6.1

Crystal structure of human zinc insulin at pH 6.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-6-6-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.2, ZN.6, CL.7, ZN.11, CL.12 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.4: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.5, ZN.9, CL.10, ZN.14, CL.15 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 1 interactions with chain L Metal complexes: D:H.10, H:H.10, L:H.10 ZN.6: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.1, CL.2, CL.7, ZN.11, CL.12 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.9: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, CL.10, ZN.14, CL.15 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 1 interactions with chain L Metal complexes: D:H.10, H:H.10, L:H.10 ZN.11: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.1, CL.2, ZN.6, CL.7, CL.12 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.14: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, ZN.9, CL.10, CL.15 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 1 interactions with chain L Metal complexes: D:H.10, H:H.10, L:H.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain F: H.10 Chain J: H.10 Ligands: ZN.1, ZN.6, CL.7, ZN.11, CL.12 Ligand excluded by PLIP CL.5: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, ZN.9, CL.10, ZN.14, CL.15 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain B: H.10 Chain J: H.10 Ligands: ZN.1, CL.2, ZN.6, ZN.11, CL.12 Ligand excluded by PLIP CL.10: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, ZN.9, ZN.14, CL.15 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain B: H.10 Chain F: H.10 Ligands: ZN.1, CL.2, ZN.6, CL.7, ZN.11 Ligand excluded by PLIP CL.15: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, ZN.9, CL.10, ZN.14 Ligand excluded by PLIP

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain D: E.13 Chain H: E.13 Chain J: E.13 Chain L: E.13 Ligands: MG.8, MG.13 No protein-ligand interaction detected (PLIP) MG.8: 6 residues within 4Å: Chain B: E.13 Chain D: E.13 Chain H: E.13 Chain L: E.13 Ligands: MG.3, MG.13 No protein-ligand interaction detected (PLIP) MG.13: 6 residues within 4Å: Chain D: E.13 Chain F: E.13 Chain H: E.13 Chain L: E.13 Ligands: MG.3, MG.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lima, L.M.T.R. et al., Crystal structure of human zinc insulin at pH 6.5. To Be Published

Release Date

2015-08-26

Peptides

Insulin: ACEGIK
Insulin: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

B
B

D
D

F
B

H
D

J
B

L
D

Insulin

Insulin

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