SMTL ID : 5l8w.1

Structure of USP12-UB-PRG/UAF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.192, C.195, C.239, C.242 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.192, A:C.195, A:C.239, A:C.242

1 x GOL: GLYCEROL(Non-covalent)

GOL.2: 1 residues within 4Å: Chain A: K.256 No protein-ligand interaction detected (PLIP)

1 x AYE: prop-2-en-1-amine(Non-functional Binders)

AYE.3: 8 residues within 4Å: Chain A: N.49, N.52, C.54, Q.128, G.322, H.323, D.339 Chain C: G.75 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dharadhar, S. et al., A conserved two-step binding for the UAF1 regulator to the USP12 deubiquitinating enzyme. J.Struct.Biol. (2016)

Release Date

2016-09-28

Peptides

Ubiquitin carboxyl-terminal hydrolase 12: A
WD repeat-containing protein 48: B
Polyubiquitin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ubiquitin carboxyl-terminal hydrolase 12

WD repeat-containing protein 48

Polyubiquitin-B

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