SMTL ID : 6f60.1

The x-ray structure of bovine pancreatic ribonuclease in complex with a five-coordinate platinum(II) compound containing a sugar ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.11, H.12, K.41, V.118, H.119, F.120 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.11, A:F.120, A:F.120 Water bridges: A:K.41, A:K.41, A:K.41, A:K.41 Salt bridges: A:H.12, A:K.41, A:H.119

2 x DVW: five-coordinate platinum(II) compound(Non-covalent)

DVW.2: 5 residues within 4Å: Chain A: Q.74, Y.76, T.78, H.105, V.124 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, pi-Cation interactions: B:K.37 pi-Stacking: A:H.105 Metal complexes: A:H.105 DVW.3: 3 residues within 4Å: Chain B: Y.76, T.78, H.105 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:T.78 Metal complexes: B:H.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cucciolito, M.E. et al., Five-Coordinate Platinum(II) Compounds Containing Sugar Ligands: Synthesis, Characterization, Cytotoxic Activity, and Interaction with Biological Macromolecules. Inorg Chem (2018)

Release Date

2018-04-25

Peptides

Ribonuclease pancreatic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribonuclease pancreatic

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