- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-4-4-4-4-1-mer
- Ligands
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.1: 3 residues within 4Å:- Chain A: M.121, P.122, K.123
Ligand excluded by PLIPCL.5: 6 residues within 4Å:- Chain C: G.45, A.46, G.47, A.48
- Chain D: T.91, S.92
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain E: M.121, P.122, K.123
Ligand excluded by PLIPCL.12: 6 residues within 4Å:- Chain G: G.45, A.46, G.47, A.48
- Chain H: T.91, S.92
Ligand excluded by PLIPCL.72: 3 residues within 4Å:- Chain K: M.121, P.122, K.123
Ligand excluded by PLIPCL.75: 6 residues within 4Å:- Chain M: G.45, A.46, G.47, A.48
- Chain N: T.91, S.92
Ligand excluded by PLIPCL.79: 3 residues within 4Å:- Chain O: M.121, P.122, K.123
Ligand excluded by PLIPCL.82: 6 residues within 4Å:- Chain Q: G.45, A.46, G.47, A.48
- Chain R: T.91, S.92
Ligand excluded by PLIP- 65 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)
CA.2: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.3: 2 residues within 4Å:- Chain C: E.57
- Chain D: E.114
No protein-ligand interaction detected (PLIP)CA.4: 2 residues within 4Å:- Chain C: E.93
- Chain D: L.107
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.93, H2O.1
CA.7: 2 residues within 4Å:- Chain C: E.65
- Chain D: V.49
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:V.49, H2O.1
CA.9: 2 residues within 4Å:- Chain G: N.69, D.73
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:D.73
CA.10: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.11: 1 residues within 4Å:- Chain G: D.91
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:D.91
CA.13: 1 residues within 4Å:- Chain I: G.112
No protein-ligand interaction detected (PLIP)CA.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.16: 3 residues within 4Å:- Chain I: C.136, G.137
- Chain J: C.202
No protein-ligand interaction detected (PLIP)CA.17: 3 residues within 4Å:- Chain I: C.190
- Chain J: G.148, G.149
No protein-ligand interaction detected (PLIP)CA.18: 1 residues within 4Å:- Chain I: G.194
No protein-ligand interaction detected (PLIP)CA.19: 2 residues within 4Å:- Chain I: C.197
- Chain J: G.142
No protein-ligand interaction detected (PLIP)CA.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.23: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.24: 3 residues within 4Å:- Chain I: C.305
- Chain J: C.33, G.34
No protein-ligand interaction detected (PLIP)CA.25: 3 residues within 4Å:- Chain I: G.33, C.34
- Chain J: G.305
No protein-ligand interaction detected (PLIP)CA.26: 2 residues within 4Å:- Chain I: G.132, G.133
No protein-ligand interaction detected (PLIP)CA.27: 1 residues within 4Å:- Chain I: C.252
No protein-ligand interaction detected (PLIP)CA.28: 2 residues within 4Å:- Chain I: G.87
- Chain J: A.251
No protein-ligand interaction detected (PLIP)CA.29: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.30: 2 residues within 4Å:- Chain I: G.301, G.302
No protein-ligand interaction detected (PLIP)CA.31: 2 residues within 4Å:- Chain I: G.220
- Chain J: T.118
No protein-ligand interaction detected (PLIP)CA.32: 2 residues within 4Å:- Chain I: C.103, C.104
No protein-ligand interaction detected (PLIP)CA.33: 1 residues within 4Å:- Chain I: A.144
No protein-ligand interaction detected (PLIP)CA.34: 2 residues within 4Å:- Chain I: G.24, G.25
No protein-ligand interaction detected (PLIP)CA.35: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.36: 1 residues within 4Å:- Chain I: G.82
No protein-ligand interaction detected (PLIP)CA.37: 1 residues within 4Å:- Chain I: G.310
No protein-ligand interaction detected (PLIP)CA.38: 1 residues within 4Å:- Chain I: G.310
No protein-ligand interaction detected (PLIP)CA.39: 2 residues within 4Å:- Chain I: A.282, A.283
No protein-ligand interaction detected (PLIP)CA.40: 1 residues within 4Å:- Chain I: A.241
No protein-ligand interaction detected (PLIP)CA.47: 2 residues within 4Å:- Chain I: G.202
- Chain J: G.136
No protein-ligand interaction detected (PLIP)CA.48: 4 residues within 4Å:- Chain I: G.137, T.138
- Chain J: A.201, C.202
No protein-ligand interaction detected (PLIP)CA.49: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.50: 1 residues within 4Å:- Chain J: A.201
No protein-ligand interaction detected (PLIP)CA.51: 2 residues within 4Å:- Chain J: G.193, G.194
No protein-ligand interaction detected (PLIP)CA.52: 2 residues within 4Å:- Chain J: A.132, G.133
No protein-ligand interaction detected (PLIP)CA.53: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.54: 2 residues within 4Å:- Chain J: A.113, G.114
No protein-ligand interaction detected (PLIP)CA.55: 1 residues within 4Å:- Chain J: G.24
No protein-ligand interaction detected (PLIP)CA.56: 1 residues within 4Å:- Chain J: G.61
No protein-ligand interaction detected (PLIP)CA.57: 1 residues within 4Å:- Chain J: A.71
No protein-ligand interaction detected (PLIP)CA.58: 1 residues within 4Å:- Chain J: G.103
No protein-ligand interaction detected (PLIP)CA.59: 2 residues within 4Å:- Chain J: G.316, G.317
No protein-ligand interaction detected (PLIP)CA.60: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.61: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.62: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.63: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.64: 1 residues within 4Å:- Chain J: T.183
No protein-ligand interaction detected (PLIP)CA.65: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.66: 2 residues within 4Å:- Chain J: G.223, C.224
No protein-ligand interaction detected (PLIP)CA.67: 2 residues within 4Å:- Chain J: A.82, C.83
No protein-ligand interaction detected (PLIP)CA.68: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.69: 2 residues within 4Å:- Chain J: G.154, T.155
No protein-ligand interaction detected (PLIP)CA.73: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.74: 1 residues within 4Å:- Chain N: E.114
No protein-ligand interaction detected (PLIP)CA.77: 2 residues within 4Å:- Chain M: E.65
- Chain N: V.49
2 PLIP interactions:1 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:V.49, H2O.7
CA.78: 2 residues within 4Å:- Chain N: D.69, E.72
1 PLIP interactions:1 interactions with chain N- Metal complexes: N:D.69
CA.80: 2 residues within 4Å:- Chain Q: D.91
- Chain R: L.107
No protein-ligand interaction detected (PLIP)CA.81: 1 residues within 4Å:- Chain Q: N.69
No protein-ligand interaction detected (PLIP)CA.83: 3 residues within 4Å:- Chain R: R.100, L.101, L.103
No protein-ligand interaction detected (PLIP)- 10 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.6: 2 residues within 4Å:- Chain C: N.39
- Chain G: N.39
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain C- Metal complexes: G:N.39, C:N.39
K.41: 3 residues within 4Å:- Chain I: T.228, A.229
- Chain J: A.113
No protein-ligand interaction detected (PLIP)K.42: 3 residues within 4Å:- Chain I: T.59, A.60
- Chain J: A.282
No protein-ligand interaction detected (PLIP)K.43: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)K.44: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)K.45: 2 residues within 4Å:- Chain I: T.289, A.290
No protein-ligand interaction detected (PLIP)K.46: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)K.70: 3 residues within 4Å:- Chain I: A.282
- Chain J: T.59, A.60
No protein-ligand interaction detected (PLIP)K.71: 3 residues within 4Å:- Chain I: A.113
- Chain J: T.228, A.229
No protein-ligand interaction detected (PLIP)K.76: 2 residues within 4Å:- Chain M: N.39
- Chain Q: N.39
3 PLIP interactions:1 interactions with chain M, 1 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: M:N.39, Q:N.39, H2O.9
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Adhireksan, Z. et al., Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res. (2021)
- Release Date
- 2021-02-17
- Peptides
- Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1x: S - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EK
KO
OB
BF
FL
LP
PC
CG
GM
MQ
QD
DH
HN
NR
RS
S
SMTL ID : 6l9z.1
338 bp di-nucleosome assembled with linker histone H1.X
Histone H3.1
Toggle Identical (EO)Histone H4
Histone H2A type 1-B/E
Histone H2B type 1-J
Toggle Identical (DHR)Histone H1x
Related Entries With Identical Sequence
1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 more...less...5xf4.1 | 5xf5.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7by0.1 | 7dbp.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v6q.1 | 7v6q.2 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7y7i.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 8a3y.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8gpn.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8h1t.1 | 8hag.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8jhf.1 | 8jhg.1 | 8of4.1 | 8off.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8thu.1 | 8tof.1 | 8u5h.1 | 8uw1.1 | 8v25.1 | 8v26.1 | 8v27.1 | 8v28.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xjv.48 | 8xjv.49 | 8xjv.50 | 8xjv.51 | 8xjv.52 | 8xjv.53 | 8xjv.54 | 8xjv.55 | 8xjv.56 | 8xjv.57 | 8xjv.58 | 8xjv.59 | 8xjv.60 | 8xjv.61 | 8xjv.62 | 8xjv.63 | 8xjv.64 | 8xjv.65 | 8xjv.66 | 8xjv.67 | 8xjv.68 | 8xjv.69 | 8xjv.70 | 8xjv.71 | 8yjf.1 | 8yjm.1 | 8yti.1 | 8z50.1 | 9b3p.1 | 9dby.1 | 9dde.1 | 9dg3.1 | 9dgg.1 | 9fgq.1 | 9fh9.1 | 9gd0.1 | 9gd1.1 | 9gd2.1 | 9gd3.1