6la8.1 | SWISS-MODEL Template Library

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SMTL ID : 6la8.1

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-4-4-4-4-1-mer

Ligands

23 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.2:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.3:	1 residues within 4Å: Chain I: G.142 No protein-ligand interaction detected (PLIP)
CA.4:	1 residues within 4Å: Chain I: T.315 No protein-ligand interaction detected (PLIP)
CA.5:	3 residues within 4Å: Chain I: G.318, A.319 Chain J: T.29 No protein-ligand interaction detected (PLIP)
CA.6:	3 residues within 4Å: Chain I: G.199, G.200, T.201 No protein-ligand interaction detected (PLIP)
CA.7:	2 residues within 4Å: Chain I: G.308 Chain J: G.37 No protein-ligand interaction detected (PLIP)
CA.8:	2 residues within 4Å: Chain I: G.28 Chain J: A.319 No protein-ligand interaction detected (PLIP)
CA.9:	3 residues within 4Å: Chain I: G.322, G.323 Chain J: G.22 No protein-ligand interaction detected (PLIP)
CA.10:	3 residues within 4Å: Chain I: C.1, G.2 Chain J: G.343 No protein-ligand interaction detected (PLIP)
CA.11:	3 residues within 4Å: Chain I: G.208 Chain J: G.137, C.138 No protein-ligand interaction detected (PLIP)
CA.12:	1 residues within 4Å: Chain I: G.219 No protein-ligand interaction detected (PLIP)
CA.15:	2 residues within 4Å: Chain J: C.141, G.142 No protein-ligand interaction detected (PLIP)
CA.16:	1 residues within 4Å: Chain J: T.265 No protein-ligand interaction detected (PLIP)
CA.17:	2 residues within 4Å: Chain J: C.315, G.316 No protein-ligand interaction detected (PLIP)
CA.18:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.19:	2 residues within 4Å: Chain J: T.203, C.204 No protein-ligand interaction detected (PLIP)
CA.20:	1 residues within 4Å: Chain J: T.275 No protein-ligand interaction detected (PLIP)
CA.21:	1 residues within 4Å: Chain J: A.145 No protein-ligand interaction detected (PLIP)
CA.22:	2 residues within 4Å: Chain I: G.211 Chain J: G.134 No protein-ligand interaction detected (PLIP)
CA.23:	2 residues within 4Å: Chain J: G.345, G.346 No protein-ligand interaction detected (PLIP)
CA.24:	1 residues within 4Å: Chain J: T.336 No protein-ligand interaction detected (PLIP)
CA.30:	1 residues within 4Å: Chain M: N.90 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:N.90

7 x K: POTASSIUM ION(Non-functional Binders)

K.13:	3 residues within 4Å: Chain I: T.234, A.235 Chain J: A.114 No protein-ligand interaction detected (PLIP)
K.14:	3 residues within 4Å: Chain I: T.60, A.61 Chain J: A.288 No protein-ligand interaction detected (PLIP)
K.25:	1 residues within 4Å: Chain J: G.227 No protein-ligand interaction detected (PLIP)
K.26:	1 residues within 4Å: Chain J: A.122 No protein-ligand interaction detected (PLIP)
K.27:	2 residues within 4Å: Chain I: A.288 Chain J: T.60 No protein-ligand interaction detected (PLIP)
K.28:	2 residues within 4Å: Chain J: T.234, A.235 No protein-ligand interaction detected (PLIP)
K.29:	2 residues within 4Å: Chain J: A.52, G.53 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Adhireksan, Z. et al., Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun (2020)

Release Date

2020-10-07

Peptides

Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1.0: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

K
K

O
O

B
B

F
F

L
L

P
P

C
C

G
G

M
M

Q
Q

D
D

H
H

N
N

R
R

S
S

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.1

Toggle Identical (EK)

Histone H4

Toggle Identical (LP)

Histone H2A type 1-B/E

Histone H2B type 1-J

Toggle Identical (DHNR)

Histone H1.0

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1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 more...less...

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