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SMTL ID : 6la8.1

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-4-4-4-4-1-mer

Ligands

23 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.2:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.3:	1 residues within 4Å: Chain I: G.142 No protein-ligand interaction detected (PLIP)
CA.4:	1 residues within 4Å: Chain I: T.315 No protein-ligand interaction detected (PLIP)
CA.5:	3 residues within 4Å: Chain I: G.318, A.319 Chain J: T.29 No protein-ligand interaction detected (PLIP)
CA.6:	3 residues within 4Å: Chain I: G.199, G.200, T.201 No protein-ligand interaction detected (PLIP)
CA.7:	2 residues within 4Å: Chain I: G.308 Chain J: G.37 No protein-ligand interaction detected (PLIP)
CA.8:	2 residues within 4Å: Chain I: G.28 Chain J: A.319 No protein-ligand interaction detected (PLIP)
CA.9:	3 residues within 4Å: Chain I: G.322, G.323 Chain J: G.22 No protein-ligand interaction detected (PLIP)
CA.10:	3 residues within 4Å: Chain I: C.1, G.2 Chain J: G.343 No protein-ligand interaction detected (PLIP)
CA.11:	3 residues within 4Å: Chain I: G.208 Chain J: G.137, C.138 No protein-ligand interaction detected (PLIP)
CA.12:	1 residues within 4Å: Chain I: G.219 No protein-ligand interaction detected (PLIP)
CA.15:	2 residues within 4Å: Chain J: C.141, G.142 No protein-ligand interaction detected (PLIP)
CA.16:	1 residues within 4Å: Chain J: T.265 No protein-ligand interaction detected (PLIP)
CA.17:	2 residues within 4Å: Chain J: C.315, G.316 No protein-ligand interaction detected (PLIP)
CA.18:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.19:	2 residues within 4Å: Chain J: T.203, C.204 No protein-ligand interaction detected (PLIP)
CA.20:	1 residues within 4Å: Chain J: T.275 No protein-ligand interaction detected (PLIP)
CA.21:	1 residues within 4Å: Chain J: A.145 No protein-ligand interaction detected (PLIP)
CA.22:	2 residues within 4Å: Chain I: G.211 Chain J: G.134 No protein-ligand interaction detected (PLIP)
CA.23:	2 residues within 4Å: Chain J: G.345, G.346 No protein-ligand interaction detected (PLIP)
CA.24:	1 residues within 4Å: Chain J: T.336 No protein-ligand interaction detected (PLIP)
CA.30:	1 residues within 4Å: Chain M: N.90 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:N.90

7 x K: POTASSIUM ION(Non-functional Binders)

K.13:	3 residues within 4Å: Chain I: T.234, A.235 Chain J: A.114 No protein-ligand interaction detected (PLIP)
K.14:	3 residues within 4Å: Chain I: T.60, A.61 Chain J: A.288 No protein-ligand interaction detected (PLIP)
K.25:	1 residues within 4Å: Chain J: G.227 No protein-ligand interaction detected (PLIP)
K.26:	1 residues within 4Å: Chain J: A.122 No protein-ligand interaction detected (PLIP)
K.27:	2 residues within 4Å: Chain I: A.288 Chain J: T.60 No protein-ligand interaction detected (PLIP)
K.28:	2 residues within 4Å: Chain J: T.234, A.235 No protein-ligand interaction detected (PLIP)
K.29:	2 residues within 4Å: Chain J: A.52, G.53 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Adhireksan, Z. et al., Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun (2020)

Release Date

2020-10-07

Peptides

Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1.0: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

K
K

O
O

B
B

F
F

L
L

P
P

C
C

G
G

M
M

Q
Q

D
D

H
H

N
N

R
R

S
S

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.1

Toggle Identical (EK)

Histone H4

Toggle Identical (LP)

Histone H2A type 1-B/E

Histone H2B type 1-J

Toggle Identical (DHNR)

Histone H1.0

Related Entries With Identical Sequence

1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 more...less...

5xf4.1 | 5xf5.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6n88.1 | 6n89.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7by0.1 | 7dbp.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v6q.1 | 7v6q.2 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7y7i.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 8a3y.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8gpn.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8h1t.1 | 8hag.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8jhf.1 | 8jhg.1 | 8of4.1 | 8off.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8thu.1 | 8tof.1 | 8u5h.1 | 8uw1.1 | 8v25.1 | 8v26.1 | 8v27.1 | 8v28.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xjv.48 | 8xjv.49 | 8xjv.50 | 8xjv.51 | 8xjv.52 | 8xjv.53 | 8xjv.54 | 8xjv.55 | 8xjv.56 | 8xjv.57 | 8xjv.58 | 8xjv.59 | 8xjv.60 | 8xjv.61 | 8xjv.62 | 8xjv.63 | 8xjv.64 | 8xjv.65 | 8xjv.66 | 8xjv.67 | 8xjv.68 | 8xjv.69 | 8xjv.70 | 8xjv.71 | 8yjf.1 | 8yjm.1 | 8yti.1 | 8z50.1 | 9b3p.1 | 9fgq.1 | 9fh9.1 | 9gd0.1 | 9gd1.1 | 9gd2.1 | 9gd3.1

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