- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.70 Å
- Oligo State
- hetero-4-4-4-4-2-mer
- Ligands
- 40 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.1: 1 residues within 4Å:- Chain A: D.78
No protein-ligand interaction detected (PLIP)CA.2: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.3: 1 residues within 4Å:- Chain F: D.25
No protein-ligand interaction detected (PLIP)CA.4: 1 residues within 4Å:- Chain G: E.42
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:E.42
CA.5: 3 residues within 4Å:- Chain G: E.65
- Chain H: V.49, H.50
2 PLIP interactions:1 interactions with chain H, 1 interactions with chain G- Metal complexes: H:V.49, G:E.65
CA.6: 2 residues within 4Å:- Chain I: T.315, G.316
No protein-ligand interaction detected (PLIP)CA.7: 3 residues within 4Å:- Chain I: G.34, C.35
- Chain J: G.311
No protein-ligand interaction detected (PLIP)CA.8: 2 residues within 4Å:- Chain I: C.203, C.204
No protein-ligand interaction detected (PLIP)CA.9: 2 residues within 4Å:- Chain I: G.211
- Chain J: G.134
No protein-ligand interaction detected (PLIP)CA.10: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.11: 2 residues within 4Å:- Chain I: G.307, G.308
No protein-ligand interaction detected (PLIP)CA.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.13: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.15: 1 residues within 4Å:- Chain J: C.206
No protein-ligand interaction detected (PLIP)CA.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.17: 1 residues within 4Å:- Chain J: C.320
No protein-ligand interaction detected (PLIP)CA.18: 1 residues within 4Å:- Chain I: G.148
No protein-ligand interaction detected (PLIP)CA.19: 1 residues within 4Å:- Chain I: A.306
No protein-ligand interaction detected (PLIP)CA.20: 2 residues within 4Å:- Chain I: G.37, C.38
No protein-ligand interaction detected (PLIP)CA.22: 1 residues within 4Å:- Chain J: C.300
No protein-ligand interaction detected (PLIP)CA.23: 2 residues within 4Å:- Chain J: T.203, C.204
No protein-ligand interaction detected (PLIP)CA.24: 1 residues within 4Å:- Chain J: A.83
No protein-ligand interaction detected (PLIP)CA.25: 1 residues within 4Å:- Chain J: C.141
No protein-ligand interaction detected (PLIP)CA.26: 1 residues within 4Å:- Chain J: T.265
No protein-ligand interaction detected (PLIP)CA.27: 3 residues within 4Å:- Chain I: G.318, A.319
- Chain J: T.29
No protein-ligand interaction detected (PLIP)CA.28: 2 residues within 4Å:- Chain J: C.315, G.316
No protein-ligand interaction detected (PLIP)CA.29: 2 residues within 4Å:- Chain J: A.307, G.308
No protein-ligand interaction detected (PLIP)CA.30: 1 residues within 4Å:- Chain J: G.25
No protein-ligand interaction detected (PLIP)CA.31: 4 residues within 4Å:- Chain I: C.311, G.312
- Chain J: C.34, G.35
No protein-ligand interaction detected (PLIP)CA.32: 2 residues within 4Å:- Chain J: A.219, C.220
No protein-ligand interaction detected (PLIP)CA.33: 3 residues within 4Å:- Chain I: A.266, C.267
- Chain J: G.79
No protein-ligand interaction detected (PLIP)CA.34: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.35: 1 residues within 4Å:- Chain J: G.142
No protein-ligand interaction detected (PLIP)CA.36: 1 residues within 4Å:- Chain J: T.339
No protein-ligand interaction detected (PLIP)CA.38: 3 residues within 4Å:- Chain I: G.287
- Chain O: D.82
- Chain P: K.80
1 PLIP interactions:1 interactions with chain O- Metal complexes: O:D.82
CA.39: 3 residues within 4Å:- Chain O: E.74, Q.77, D.78
1 PLIP interactions:1 interactions with chain O- Metal complexes: O:D.78
CA.40: 1 residues within 4Å:- Chain O: D.82
No protein-ligand interaction detected (PLIP)CA.41: 1 residues within 4Å:- Chain O: D.78
No protein-ligand interaction detected (PLIP)CA.42: 1 residues within 4Å:- Chain Q: G.23
1 PLIP interactions:1 interactions with chain Q- Metal complexes: Q:G.23
- 2 x K: POTASSIUM ION(Non-functional Binders)
K.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)K.37: 1 residues within 4Å:- Chain J: A.226
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Adhireksan, Z. et al., Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun (2020)
- Release Date
- 2020-10-07
- Peptides
- Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1.0: ST - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EK
KO
OB
BF
FL
LP
PC
CG
GM
MQ
QD
DH
HN
NR
RS
ST
T
SMTL ID : 6la9.1
349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant)
Histone H3.1
Toggle Identical (AK) Toggle Identical (EO)Histone H4
Toggle Identical (BLP)Histone H2A type 1-B/E
Toggle Identical (CGM)Histone H2B type 1-J
Toggle Identical (DHNR)Histone H1.0
Related Entries With Identical Sequence
1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 more...less...5xf4.1 | 5xf5.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6n88.1 | 6n89.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7by0.1 | 7dbp.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v6q.1 | 7v6q.2 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7y7i.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8gpn.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8gxq.12 | 8gxq.79 | 8gxs.12 | 8gxs.81 | 8h1t.1 | 8hag.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8jhf.1 | 8jhg.1 | 8of4.1 | 8off.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8thu.1 | 8tof.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8yjf.1 | 8yjm.1 | 8yti.1