SMTL ID : 8oqd.1

Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (1 h soaking)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x D1O: tri-(mi2-acetato-(O, O')-diaqua-dirhodium(II, II)(Non-covalent)

D1O.1: 7 residues within 4Å: Chain A: K.7, F.8, Q.11, H.12, V.118, H.119 Ligands: CL.4 13 PLIP interactions: 12 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:V.118 Water bridges: A:K.7, A:K.7, A:K.7, A:Q.11, A:K.41, A:F.120 Salt bridges: A:K.7, A:H.119, A:H.119, A:H.119 Metal complexes: A:H.119, D1O.1

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: V.43, D.83, R.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.83, A:R.85

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Ligands: VVU.5 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: K.7 Ligands: D1O.1 Ligand excluded by PLIP

1 x VVU: dirhodium (II) tetraacetate(Non-covalent)

VVU.5: 4 residues within 4Å: Chain A: T.78, H.105, V.124 Ligands: CL.3 8 PLIP interactions: 7 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:T.78 Water bridges: A:H.105 Salt bridges: A:H.105, A:H.105, A:H.105, A:H.105 Metal complexes: A:H.105, VVU.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loreto, D. et al., Cross-Linked Crystals of Dirhodium Tetraacetate/RNase A Adduct Can Be Used as Heterogeneous Catalysts. Inorg.Chem. (2023)

Release Date

2023-06-14

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease pancreatic

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