SMTL ID : 8oqf.1

Cross-linked crystal of Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (low temperature data collection)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: V.43, D.83, R.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.85 Water bridges: A:T.45, A:T.45 FMT.2: 4 residues within 4Å: Chain A: S.18, A.19, S.80, N.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.103

1 x F3I: (mi2-acetato-O, O')-hexaaquo-dirhodium (II)(Non-covalent)

F3I.3: 3 residues within 4Å: Chain A: K.7, V.118, H.119 4 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Water bridges: A:K.7 Metal complexes: A:H.119, F3I.3, H2O.7

1 x VVU: dirhodium (II) tetraacetate(Non-covalent)

VVU.4: 3 residues within 4Å: Chain A: T.78, H.105 Ligands: CL.5 8 PLIP interactions: 7 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:T.78 Water bridges: A:H.105 Salt bridges: A:H.105, A:H.105, A:H.105, A:H.105 Metal complexes: A:H.105, VVU.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Ligands: VVU.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loreto, D. et al., Cross-Linked Crystals of Dirhodium Tetraacetate/RNase A Adduct Can Be Used as Heterogeneous Catalysts. Inorg.Chem. (2023)

Release Date

2023-06-14

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease pancreatic

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