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SMTL ID : 8oqg.1

Cross-linked crystal of dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (high temperature data collection)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x VVU: dirhodium (II) tetraacetate(Non-covalent)

VVU.1:

4 residues within 4Å:

Chain A: T.78, H.105, V.124
Ligands: CL.4

8 PLIP interactions:

7 interactions with chain A, 1 Ligand-Ligand interactions

Hydrophobic interactions: A:T.78
Water bridges: A:H.105
Salt bridges: A:H.105, A:H.105, A:H.105, A:H.105
Metal complexes: A:H.105, VVU.1

1 x VW5: dirhodium (II) oxide(Covalent)

VW5.2:

4 residues within 4Å:

Chain A: K.7, Q.11, V.118, H.119

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.7, A:K.7, A:Q.11
Metal complexes: A:H.119

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3:

3 residues within 4Å:

Chain A: V.43, D.83, R.85

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:R.85
Water bridges: A:D.83

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4:

1 residues within 4Å:

Ligands: VVU.1

Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Loreto, D. et al., Cross-Linked Crystals of Dirhodium Tetraacetate/RNase A Adduct Can Be Used as Heterogeneous Catalysts. Inorg.Chem. (2023)

Release Date

2023-06-14

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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