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SMTL ID : 9cm3.1

Cryo-EM structure of Gq-coupled FFA2 in complex with TUG-1375 and compound 187

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 9UJ: (2R,4R)-2-(2-chlorophenyl)-3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]carbonyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)

9UJ.1:

18 residues within 4Å:

Chain D: S.131, F.132, Y.135, C.186, V.189, I.190, V.192, Q.193, Y.210, F.213, Q.217, V.220, V.221, V.224, R.225, L.228, Y.283, R.300

17 PLIP interactions:

17 interactions with chain D

Hydrophobic interactions: D:F.132, D:Y.135, D:V.189, D:I.190, D:V.192, D:Y.210, D:Y.210, D:F.213, D:Q.217, D:V.221, D:V.224
Hydrogen bonds: D:R.225, D:Y.283
Salt bridges: D:R.225, D:H.287, D:R.300
Halogen bonds: D:C.186

1 x 01: 4-[(2R,6S)-2,6-dimethylmorpholin-4-yl]-7-(2-fluorobenzene-1-sulfonyl)-2-methyl-5H-pyrrolo[3,2-d]pyrimidin-6-amine

01.2:

13 residues within 4Å:

Chain D: P.88, G.147, E.151, L.154, F.158, Q.161, Y.162, S.165, R.166, Y.170, I.173, A.174
Ligands: PLM.4

9 PLIP interactions:

9 interactions with chain D

Hydrophobic interactions: D:E.151, D:F.158, D:Q.161, D:Y.170, D:I.173
Hydrogen bonds: D:E.151
Salt bridges: D:E.151
pi-Stacking: D:Y.170, D:Y.170

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.3:

10 residues within 4Å:

Chain D: I.81, I.91, L.94, S.95, A.99, C.140, V.172, A.175, L.176, W.179

8 PLIP interactions:

8 interactions with chain D

Hydrophobic interactions: D:I.81, D:I.91, D:I.91, D:L.94, D:A.99, D:V.172, D:L.176, D:W.179

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.4:

3 residues within 4Å:

Chain D: W.143, I.150
Ligands: 01.2

1 PLIP interactions:

1 interactions with chain D

Hydrophobic interactions: D:W.143

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhang, X. et al., Allosteric modulation and biased signalling at free fatty acid receptor 2. Nature (2025)

Release Date

2025-06-25

Peptides

Guanine nucleotide-binding protein G(q) subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
scFv16: C
Free fatty acid receptor 2: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
N

D
R

E
G

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(q) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFv16

Free fatty acid receptor 2

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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