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SMTL ID : 9cm7.1

Cryo-EM structure of Gi-coupled FFA2 in complex with TUG-1375 and AZ-1729

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 9UJ: (2R,4R)-2-(2-chlorophenyl)-3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]carbonyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)

9UJ.1:

18 residues within 4Å:

Chain A: S.131, F.132, Y.135, C.186, V.189, I.190, V.192, Q.193, Y.210, F.213, Q.217, V.220, V.221, V.224, R.225, L.228, Y.283, R.300

16 PLIP interactions:

16 interactions with chain A

Hydrophobic interactions: A:F.132, A:Y.135, A:Y.135, A:I.190, A:V.192, A:Q.193, A:Q.193, A:Y.210, A:Y.210, A:Y.210, A:F.213, A:V.220, A:V.221, A:V.224
Salt bridges: A:R.300
Halogen bonds: A:C.186

1 x 01: N-[(3M)-3-(2-carbamimidamido-4-methyl-1,3-thiazol-5-yl)phenyl]-4-fluorobenzamide

01.2:

13 residues within 4Å:

Chain A: P.88, W.143, A.146, E.151, L.154, Y.162, S.165, Y.170, I.173, A.174, I.235, P.236, V.239

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:W.143, A:W.143, A:A.146, A:Y.170, A:I.173
Hydrogen bonds: A:S.165, A:S.165
Salt bridges: A:E.151

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhang, X. et al., Allosteric modulation and biased signalling at free fatty acid receptor 2. Nature (2025)

Release Date

2025-06-25

Peptides

Free fatty acid receptor 2: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
N

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Free fatty acid receptor 2

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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