SMTL ID : 9f1m.1 (3 other biounits)

First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 45

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

1 x NA: SODIUM ION

NA.2: 3 residues within 4Å: Chain A: Y.96, I.97, N.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.97

1 x 01: 1-[2-[7-[2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]ethanoylamino]heptanoylamino]-3,3-dimethyl-butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide

01.3: 12 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, K.50, L.51, L.53, N.99, D.104, I.105, L.107, M.108 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:K.50, A:L.51, A:L.51, A:L.53, A:I.105, A:L.107 Hydrogen bonds: A:N.99, A:D.104 Salt bridges: A:D.104 pi-Cation interactions: A:K.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balourdas, D.I. et al., First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 45. to be published

Release Date

2024-09-11

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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