- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain B: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.138
BME.5: 4 residues within 4Å:- Chain D: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.138
BME.8: 4 residues within 4Å:- Chain F: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:S.138
BME.11: 4 residues within 4Å:- Chain H: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:S.138
BME.14: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.138
BME.17: 5 residues within 4Å:- Chain L: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:S.138
BME.20: 4 residues within 4Å:- Chain N: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:S.138
BME.23: 4 residues within 4Å:- Chain P: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:S.138
BME.26: 4 residues within 4Å:- Chain R: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:S.138
BME.29: 4 residues within 4Å:- Chain T: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:S.138
BME.32: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:S.138
BME.35: 5 residues within 4Å:- Chain X: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:S.138
- 12 x DHY: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID(Non-covalent)
DHY.3: 13 residues within 4Å:- Chain A: P.15, Y.16, R.133
- Chain B: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.1
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:P.15, A:Y.16, B:Y.147, B:W.149, B:I.191
- Water bridges: A:Y.16
- Hydrogen bonds: B:R.157
DHY.6: 12 residues within 4Å:- Chain C: P.15, Y.16, R.133
- Chain D: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, I.191
- Ligands: FE.4
7 PLIP interactions:5 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Y.147, D:W.149, D:I.191, C:Y.16
- Hydrogen bonds: D:Y.24, D:R.157
- Water bridges: C:Y.16
DHY.9: 12 residues within 4Å:- Chain E: P.15, Y.16, R.133
- Chain F: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, I.191
- Ligands: FE.7
7 PLIP interactions:3 interactions with chain E, 4 interactions with chain F- Hydrophobic interactions: E:P.15, E:Y.16, F:Y.147, F:W.149, F:I.191
- Water bridges: E:Y.16
- Hydrogen bonds: F:R.157
DHY.12: 13 residues within 4Å:- Chain G: P.15, Y.16, R.133
- Chain H: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.10
7 PLIP interactions:3 interactions with chain G, 4 interactions with chain H- Hydrophobic interactions: G:P.15, G:Y.16, H:Y.147, H:W.149, H:I.191
- Water bridges: G:Y.16
- Hydrogen bonds: H:R.157
DHY.15: 13 residues within 4Å:- Chain I: P.15, Y.16, R.133
- Chain J: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
10 PLIP interactions:8 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:Y.24, J:Y.147, J:W.149, J:I.191, I:P.15
- Hydrogen bonds: J:Y.24, J:R.157, J:Q.177, J:Q.177
- Water bridges: I:Y.16
DHY.18: 13 residues within 4Å:- Chain K: P.15, Y.16, R.133
- Chain L: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.16
7 PLIP interactions:3 interactions with chain K, 4 interactions with chain L- Hydrophobic interactions: K:P.15, K:Y.16, L:Y.147, L:W.149, L:I.191
- Water bridges: K:Y.16
- Hydrogen bonds: L:R.157
DHY.21: 13 residues within 4Å:- Chain M: P.15, Y.16, R.133
- Chain N: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.19
8 PLIP interactions:5 interactions with chain N, 3 interactions with chain M- Hydrophobic interactions: N:Y.147, N:W.149, N:I.191, M:P.15, M:Y.16
- Hydrogen bonds: N:Y.24, N:R.157
- Water bridges: M:Y.16
DHY.24: 12 residues within 4Å:- Chain O: P.15, Y.16, R.133
- Chain P: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, I.191
- Ligands: FE.22
6 PLIP interactions:4 interactions with chain P, 2 interactions with chain O- Hydrophobic interactions: P:Y.147, P:W.149, P:I.191, O:Y.16
- Hydrogen bonds: P:R.157
- Water bridges: O:Y.16
DHY.27: 12 residues within 4Å:- Chain Q: P.15, Y.16, R.133
- Chain R: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, I.191
- Ligands: FE.25
8 PLIP interactions:3 interactions with chain Q, 5 interactions with chain R- Hydrophobic interactions: Q:P.15, Q:Y.16, R:Y.147, R:W.149, R:I.191
- Water bridges: Q:Y.16
- Hydrogen bonds: R:Y.24, R:R.157
DHY.30: 13 residues within 4Å:- Chain S: P.15, Y.16, R.133
- Chain T: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.28
8 PLIP interactions:5 interactions with chain T, 3 interactions with chain S- Hydrophobic interactions: T:Y.147, T:W.149, T:I.191, S:P.15, S:Y.16
- Hydrogen bonds: T:Y.24, T:R.157
- Water bridges: S:Y.16
DHY.33: 13 residues within 4Å:- Chain U: P.15, Y.16, R.133
- Chain V: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.31
9 PLIP interactions:2 interactions with chain U, 7 interactions with chain V- Hydrophobic interactions: U:P.15, V:Y.24, V:Y.147, V:W.149, V:I.191
- Water bridges: U:Y.16
- Hydrogen bonds: V:R.157, V:Q.177, V:Q.177
DHY.36: 13 residues within 4Å:- Chain W: P.15, Y.16, R.133
- Chain X: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.34
8 PLIP interactions:5 interactions with chain X, 3 interactions with chain W- Hydrophobic interactions: X:Y.147, X:W.149, X:I.191, W:P.15, W:Y.16
- Hydrogen bonds: X:Y.24, X:R.157
- Water bridges: W:Y.16
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Elgren, T.E. et al., Crystal structure and resonance Raman studies of protocatechuate 3,4-dioxygenase complexed with 3,4-dihydroxyphenylacetate. Biochemistry (1997)
- Release Date
- 1998-02-25
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 12 x DHY: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Elgren, T.E. et al., Crystal structure and resonance Raman studies of protocatechuate 3,4-dioxygenase complexed with 3,4-dihydroxyphenylacetate. Biochemistry (1997)
- Release Date
- 1998-02-25
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R