SMTL ID : 3tu5.1

Actin complex with Gelsolin Segment 1 fused to Cobl segment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.13 Ligands: ATP.2 No protein-ligand interaction detected (PLIP) CA.5: 4 residues within 4Å: Chain B: G.59, D.60, E.91, V.139 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:G.59, B:D.60, B:E.91, B:E.91, B:V.139

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 21 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.76, G.158, D.159, G.160, V.161, G.184, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:L.18, A:G.158, A:D.159, A:D.159, A:G.160, A:V.161, A:V.161, A:K.215, A:E.216, A:E.216, A:G.304, A:T.305 Water bridges: A:Q.139, A:Y.308, A:K.338 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 10 residues within 4Å: Chain A: Y.135, A.137, I.138, V.141, L.142, Y.145, G.170, Y.171, L.348 Ligands: MPD.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.135, A:I.138, A:V.141, A:L.142, A:Y.145, A:L.348 Hydrogen bonds: A:I.138 MPD.4: 10 residues within 4Å: Chain A: Y.135, Y.145, Y.171, L.348, M.357 Chain B: I.97, V.100, Q.101, D.104 Ligands: MPD.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.100 Hydrogen bonds: B:Q.101, B:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durer, Z.A. et al., Structural States and dynamics of the d-loop in actin. Biophys.J. (2012)

Release Date

2012-09-26

Peptides

Actin, alpha skeletal muscle: A
Gelsolin,Protein cordon-bleu,Thymosin beta-4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Actin, alpha skeletal muscle

Gelsolin,Protein cordon-bleu,Thymosin beta-4

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