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SMTL ID : 4lcw.1 (1 other biounit)

The structure of human MAIT TCR in complex with MR1-K43A-RL-6-Me-7OH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

3 residues within 4Å:

Chain A: E.181, P.182, G.205

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:E.181

1 x 1VY: 1-deoxy-1-(7-hydroxy-6-methyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol(Non-covalent)

1VY.2:

15 residues within 4Å:

Chain A: Y.8, R.10, S.25, T.35, Y.63, L.67, W.70, R.95, I.97, Y.153, Q.154, W.157, W.165
Chain C: Y.95
Chain D: G.98

15 PLIP interactions:

14 interactions with chain A, 1 interactions with chain C

Hydrophobic interactions: A:Y.63
Hydrogen bonds: A:R.10, A:R.10, A:S.25, A:S.25, A:W.70, A:R.95, A:R.95, A:Q.154, A:W.157, A:W.165, C:Y.95
Water bridges: A:T.35, A:Q.154
pi-Stacking: A:Y.8

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Reantragoon, R. et al., Antigen-loaded MR1 tetramers define T cell receptor heterogeneity in mucosal-associated invariant T cells. J.Exp.Med. (2013)

Release Date

2013-10-02

Peptides

Major histocompatibility complex class I-related gene protein: A
Beta-2-microglobulin: B
MAIT T cell receptor alpha chain: C
MAIT T cell receptor beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Major histocompatibility complex class I-related gene protein

Beta-2-microglobulin

MAIT T cell receptor alpha chain

MAIT T cell receptor beta chain

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