SMTL ID : 4nqd.1 (4 other biounits)

Crystal structure of TCR-MR1 ternary complex and non-covalently bound 5-(2-oxopropylideneamino)-6-D-ribitylaminouracil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-oligomer

Ligands

1 x 2LJ: 1-DEOXY-1-({2,6-DIOXO-5-[(E)-(2-OXOPROPYLIDENE)AMINO]-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL}AMINO)-D-RIBITOL(Non-covalent)

2LJ.1: 14 residues within 4Å: Chain A: Y.8, R.10, S.25, T.35, H.59, W.60, Y.63, L.67, W.70, R.95, I.97, Y.153, Q.154, W.157 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.63 Hydrogen bonds: A:R.10, A:S.25, A:S.25, A:R.95, A:R.95, A:Q.154, A:W.157 Water bridges: A:R.10, A:G.27, A:Y.63 pi-Stacking: A:Y.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corbett, A.J. et al., T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature (2014)

Release Date

2014-04-16

Peptides

Major histocompatibility complex class I-related gene protein: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major histocompatibility complex class I-related gene protein

Beta-2-microglobulin

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