SMTL ID : 8yzr.1

The structure of HLA/peptide from virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASN- TYR- ASN- TYR- LEU- TYR- ARG- LEU- LEU: Spike protein S1(Non-covalent)

ASN-TYR-ASN-TYR-LEU-TYR-ARG-LEU-LEU.1: 31 residues within 4Å: Chain A: M.5, Y.7, F.22, A.24, M.45, Y.59, E.62, E.63, K.66, V.67, A.69, H.70, T.73, E.76, N.77, I.80, Y.84, F.99, H.114, Y.123, T.143, W.147, A.150, V.152, Q.155, Q.156, Y.159, T.163, G.167, R.170, Y.171 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:K.66, A:K.66, A:V.67, A:A.69, A:H.70, A:E.76, A:N.77, A:I.80, A:F.99, A:Y.123, A:T.143, A:V.152, A:Y.159, A:T.163 Hydrogen bonds: A:Y.7, A:E.63, A:E.63, A:N.77, A:N.77, A:T.143, A:Q.155, A:Q.156, A:Y.159, A:R.170, A:R.170, A:Y.171 Water bridges: A:Y.7, A:E.62, A:K.66, A:K.66, A:H.70, A:K.146, A:Q.156 Salt bridges: A:K.146 pi-Stacking: A:Y.7, A:F.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, J.M. et al., Further cytotoxic T cell escapes of SARS-CoV-2 JN.1 explain its dominant circulation in recent waves. to be published

Release Date

2025-01-29

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

Related Entries With Identical Sequence