SMTL ID : 4wu7.2 (1 other biounit)

HLA-A24 in complex with HIV-1 Nef134-8(2F)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- PHE- PRO- LEU- THR- PHE- GLY- TRP: 8-Mer peptide from Protein Nef(Non-covalent)

ARG-PHE-PRO-LEU-THR-PHE-GLY-TRP.1: 25 residues within 4Å: Chain A: M.6, Y.8, E.56, Y.60, E.64, K.67, V.68, H.71, T.74, N.78, I.81, Y.85, L.96, M.98, F.100, Y.117, Y.124, T.144, K.147, W.148, V.153, Q.157, Y.160, R.171, Y.172 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:Y.8, A:V.68, A:H.71, A:L.96, A:F.100, A:F.100, A:Y.117, A:V.153, A:V.153 Hydrogen bonds: A:Y.8, A:E.64, A:K.67, A:T.74, A:T.74, A:N.78, A:T.144, A:Q.157, A:R.171, A:Y.172 Water bridges: A:N.78, A:N.78, A:Y.117, A:Y.117 Salt bridges: A:E.56, A:K.147 pi-Stacking: A:Y.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kato, J. et al., Crystal structure of Nef134-8 epitope presented by HLA-A24. To Be Published

Release Date

2015-05-06

Peptides

HLA class I histocompatibility antigen, A-24 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

HLA class I histocompatibility antigen, A-24 alpha chain

Beta-2-microglobulin

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