SMTL ID : 4mji.2 (1 other biounit)

T cell response to a HIV reverse transcriptase epitope presented by the protective allele HLA-B*51:01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x THR- ALA- PHE- THR- ILE- PRO- SER- ILE: HIV Reverse Transcriptase peptide Marker(Non-covalent)

THR-ALA-PHE-THR-ILE-PRO-SER-ILE.1: 29 residues within 4Å: Chain A: Y.7, Y.9, Y.59, N.63, I.66, F.67, T.69, N.70, T.73, Y.74, N.77, I.80, Y.84, Y.99, Y.116, T.143, K.146, W.147, E.152, L.156, Y.159, L.163, W.167 Chain C: S.92, A.93, R.94 Chain D: T.29, Q.49, T.96 28 PLIP interactions: 26 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:Y.7, A:Y.59, A:F.67, A:T.69, A:Y.74, A:Y.74, A:I.80, A:Y.84, A:Y.99, A:K.146, A:W.147, A:L.156, A:Y.159, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.9, A:N.63, A:N.70, A:N.70, A:T.73, A:N.77, A:N.77, A:Y.99, A:Y.99, A:Y.159, A:W.167, D:T.29, D:T.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Motozono, C. et al., Molecular basis of a dominant T cell response to an HIV reverse transcriptase 8-mer epitope presented by the protective allele HLA-B*51:01. J.Immunol. (2014)

Release Date

2014-05-28

Peptides

HLA class I histocompatibility antigen, B-51 alpha chain: A
Beta-2-microglobulin: B
T-Cell Receptor Chain alpha: C
T-cell Receptor Beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
I

D
J

HLA class I histocompatibility antigen, B-51 alpha chain

Beta-2-microglobulin

T-Cell Receptor Chain alpha

T-cell Receptor Beta chain

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