SMTL ID : 4o2f.1 (1 other biounit)

A peptide complexed with HLA-B*3901

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HIS- VAL- ALA- VAL- GLU- ASN- ALA- LEU: Peptide from ATP-dependent RNA helicase DDX3X(Non-covalent)

HIS-VAL-ALA-VAL-GLU-ASN-ALA-LEU.1: 26 residues within 4Å: Chain A: Y.7, Y.9, S.24, E.45, R.62, N.63, I.66, C.67, T.69, T.73, E.76, S.77, N.80, Y.84, L.95, R.97, Y.99, F.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:I.66, A:I.66, A:E.76, A:L.95, A:Y.99, A:F.116, A:Y.123, A:W.147, A:V.152, A:Q.155, A:L.156, A:Y.159 Hydrogen bonds: A:Y.9, A:S.24, A:R.62, A:R.62, A:N.63, A:N.63, A:S.77, A:N.80, A:Y.84, A:Y.99, A:K.146 Water bridges: A:Y.7, A:T.73, A:T.73, A:R.97, A:R.97, A:R.97, A:R.97, A:R.97, A:R.97, A:Y.99 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, M. et al., N alpha-terminal acetylation for T cell recognition: molecular basis of MHC class I-restricted n alpha-acetylpeptide presentation. J.Immunol. (2014)

Release Date

2014-07-23

Peptides

HLA class I histocompatibility antigen, B-39 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-39 alpha chain

Beta-2-microglobulin

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