- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-3-3-3-3-mer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.1: 8 residues within 4Å:- Chain A: N.126
- Chain R: W.108, S.109
- Chain S: N.32, Y.50, R.51, A.53, A.54
2 PLIP interactions:2 interactions with chain S- Hydrogen bonds: S:Y.50, S:Y.50
NAG-NAG.2: 8 residues within 4Å:- Chain B: N.126
- Chain P: W.108, S.109
- Chain Q: N.32, Y.50, R.51, A.53, A.54
2 PLIP interactions:2 interactions with chain Q- Hydrogen bonds: Q:Y.50, Q:Y.50
NAG-NAG.3: 8 residues within 4Å:- Chain C: N.126
- Chain T: W.108, S.109
- Chain U: N.32, Y.50, R.51, A.53, A.54
2 PLIP interactions:2 interactions with chain U- Hydrogen bonds: U:Y.50, U:Y.50
NAG-NAG.7: 3 residues within 4Å:- Chain D: N.355, S.357
- Ligands: NAG.19
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 3 residues within 4Å:- Chain E: N.355, S.357
- Ligands: NAG.25
No protein-ligand interaction detected (PLIP)NAG-NAG.15: 3 residues within 4Å:- Chain F: N.355, S.357
- Ligands: NAG.31
No protein-ligand interaction detected (PLIP)- 3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.4: 21 residues within 4Å:- Chain D: K.202, N.204, H.321
- Chain P: T.19, W.55, S.57, S.58, A.59, R.64, G.65, V.67, L.68, I.69, S.70, A.71, V.72, D.73, L.74, I.81, S.83, E.85
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:D.73, P:A.71
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.8: 21 residues within 4Å:- Chain E: K.202, N.204
- Chain R: T.19, T.29, W.55, S.57, S.58, A.59, R.64, G.65, V.67, L.68, I.69, S.70, A.71, V.72, D.73, L.74, I.81, S.83, E.85
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:D.73, R:A.71
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.12: 21 residues within 4Å:- Chain F: K.202, N.204, H.321
- Chain T: T.19, W.55, S.57, S.58, A.59, R.64, G.65, V.67, L.68, I.69, S.70, A.71, V.72, D.73, L.74, I.81, S.83, E.85
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:D.73, T:A.71
- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.5: 13 residues within 4Å:- Chain D: L.231, N.232, F.345, N.346, C.347, G.348, I.407, Q.408, G.409, R.412, V.414, S.415
- Ligands: NAG.21
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:G.348, D:V.414, D:Q.408, D:Q.408, D:G.409
NAG-NAG-BMA-MAN-MAN.9: 13 residues within 4Å:- Chain E: L.231, N.232, F.345, N.346, C.347, G.348, I.407, Q.408, G.409, R.412, V.414, S.415
- Ligands: NAG.27
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.348, E:Q.408, E:Q.408, E:G.409
NAG-NAG-BMA-MAN-MAN.13: 13 residues within 4Å:- Chain F: L.231, N.232, F.345, N.346, C.347, G.348, I.407, Q.408, G.409, R.412, V.414, S.415
- Ligands: NAG.33
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:G.348, F:Q.408, F:Q.408, F:G.409
- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.6: 7 residues within 4Å:- Chain D: N.246, T.248, N.249
- Chain P: H.3, Y.25, G.26, N.28
2 PLIP interactions:2 interactions with chain P- Hydrogen bonds: P:Q.1, P:Y.25, P:Y.25
NAG-NAG-BMA-MAN-MAN.10: 8 residues within 4Å:- Chain E: N.246, T.248, N.249
- Chain R: H.3, Y.25, G.26, V.27, N.28
2 PLIP interactions:2 interactions with chain R- Hydrogen bonds: R:Q.1, R:Y.25, R:Y.25
NAG-NAG-BMA-MAN-MAN.14: 7 residues within 4Å:- Chain F: N.246, T.248, N.249
- Chain T: H.3, Y.25, G.26, N.28
2 PLIP interactions:2 interactions with chain T- Hydrogen bonds: T:Q.1, T:Y.25, T:Y.25
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.16: 4 residues within 4Å:- Chain D: N.265, S.303, R.412
- Ligands: NAG.17
Ligand excluded by PLIPNAG.17: 5 residues within 4Å:- Chain D: T.267, H.299, N.301, T.383
- Ligands: NAG.16
Ligand excluded by PLIPNAG.18: 1 residues within 4Å:- Chain D: N.308
Ligand excluded by PLIPNAG.19: 5 residues within 4Å:- Chain D: N.332, S.333, T.341
- Ligands: NAG-NAG.7, NAG-NAG.7
Ligand excluded by PLIPNAG.20: 2 residues within 4Å:- Chain D: G.358, N.361
Ligand excluded by PLIPNAG.21: 5 residues within 4Å:- Chain D: K.222, N.232, P.261, N.416
- Ligands: NAG-NAG-BMA-MAN-MAN.5
Ligand excluded by PLIPNAG.22: 4 residues within 4Å:- Chain E: N.265, S.303, R.412
- Ligands: NAG.23
Ligand excluded by PLIPNAG.23: 5 residues within 4Å:- Chain E: T.267, H.299, N.301, T.383
- Ligands: NAG.22
Ligand excluded by PLIPNAG.24: 1 residues within 4Å:- Chain E: N.308
Ligand excluded by PLIPNAG.25: 5 residues within 4Å:- Chain E: N.332, S.333, T.341
- Ligands: NAG-NAG.11, NAG-NAG.11
Ligand excluded by PLIPNAG.26: 2 residues within 4Å:- Chain E: G.358, N.361
Ligand excluded by PLIPNAG.27: 6 residues within 4Å:- Chain E: K.222, N.232, P.261, V.414, N.416
- Ligands: NAG-NAG-BMA-MAN-MAN.9
Ligand excluded by PLIPNAG.28: 4 residues within 4Å:- Chain F: N.265, S.303, R.412
- Ligands: NAG.29
Ligand excluded by PLIPNAG.29: 5 residues within 4Å:- Chain F: T.267, H.299, N.301, T.383
- Ligands: NAG.28
Ligand excluded by PLIPNAG.30: 1 residues within 4Å:- Chain F: N.308
Ligand excluded by PLIPNAG.31: 5 residues within 4Å:- Chain F: N.332, S.333, T.341
- Ligands: NAG-NAG.15, NAG-NAG.15
Ligand excluded by PLIPNAG.32: 2 residues within 4Å:- Chain F: G.358, N.361
Ligand excluded by PLIPNAG.33: 6 residues within 4Å:- Chain F: K.222, N.232, P.261, V.414, N.416
- Ligands: NAG-NAG-BMA-MAN-MAN.13
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, H. et al., Partially Open HIV-1 Envelope Structures Exhibit Conformational Changes Relevant for Coreceptor Binding and Fusion. Cell Host Microbe (2018)
- Release Date
- 2018-10-17
- Peptides
- Envelope glycoprotein gp160: ABC
Envelope glycoprotein gp160: DEF
T-cell surface glycoprotein CD4: GHI
17b Fab light chain: JLN
17b Fab heavy chain: KMO
8ANC195 Fab heavy chain: PRT
8ANC195 Fab light chain: QSU - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JL
LN
NK
KM
MO
OP
PR
RT
TQ
QS
SU
U
SMTL ID : 6cm3.1
BG505 SOSIP in complex with sCD4, 17b, 8ANC195
Envelope glycoprotein gp160
Toggle Identical (ABC)Envelope glycoprotein gp160
Toggle Identical (DEF)T-cell surface glycoprotein CD4
Toggle Identical (GHI)17b Fab light chain
Toggle Identical (JLN)17b Fab heavy chain
Toggle Identical (KMO)8ANC195 Fab heavy chain
Toggle Identical (PRT)8ANC195 Fab light chain
Toggle Identical (QSU)Related Entries With Identical Sequence
1rz8.1 | 1rz8.2 | 1rzj.1 | 1rzk.1 | 1yyl.1 | 1yyl.2 | 1yym.1 | 1yym.2 | 2i5y.1 | 2i5y.2 | 2i60.1 | 2i60.2 | 2nxy.1 | 2nxz.1 | 2ny0.1 | 2ny1.1 | 2ny2.1 | 2ny3.1 | 2ny4.1 | 2ny5.1 | 2ny6.1 | 3lqa.1 | 4jm2.1 | 4p9h.1 | 4p9m.1 | 4rqs.1 | 4rqs.2 | 4tvp.1 | 4zmj.1 | 5a7x.1 more...less...5a8h.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyl.1 | 5i8h.1 | 5i8h.2 | 5js9.1 | 5jsa.1 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6crq.1 | 6de7.1 | 6did.1 | 6edu.1 | 6mn7.1 | 6mtj.1 | 6mtn.1 | 6mu6.1 | 6mu7.1 | 6mu8.1 | 6nf2.1 | 6nm6.1 | 6nnf.1 | 6nnj.1 | 6opa.1 | 6osy.1 | 6ot1.1 | 6oz4.1 | 6ozc.1 | 6pw6.1 | 6u0l.1 | 6u0n.1 | 6udj.1 | 6vi0.1 | 6vn0.1 | 6w03.1 | 6x96.1 | 6x97.1 | 6x98.1 | 6x9r.1 | 6x9r.2 | 6x9r.3 | 6x9s.1 | 6x9s.2 | 6x9s.3 | 6x9t.1 | 6x9t.2 | 6x9t.3 | 6x9u.1 | 6x9u.2 | 6x9u.3 | 6x9v.1 | 6x9v.2 | 6x9v.3 | 6xrt.1 | 7kde.1 | 7klc.1 | 7lo6.1 | 7lok.1 | 7lpn.1 | 7mxe.1 | 7pc2.1 | 7rai.1 | 7sd3.1 | 7tfn.1 | 7tfo.1 | 7txd.1 | 7ucf.1 | 7uoj.1 | 8dp1.1 | 8dto.1 | 8e1p.1 | 8euu.1 | 8euv.1 | 8euw.1 | 8fis.1 | 8fk5.1 | 8fl1.1 | 8flw.1 | 8fyj.1 | 8g85.1 | 8g9w.1 | 8g9x.1 | 8g9y.1 | 8gas.1 | 8gpi.1 | 8gpj.1 | 8sal.1 | 8san.1 | 8saq.1 | 8sat.1 | 8sav.1 | 8ttw.1