7vdv.1 | SWISS-MODEL Template Library

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SMTL ID : 7vdv.1

The overall structure of human chromatin remodeling PBAF-nucleosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-1-1-1-1-1-2-1-1-1-1-mer

Ligands

1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK: unknown(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK.1:

4 residues within 4Å:

Chain J: A.235
Chain O: Y.610, G.611, V.612

2 PLIP interactions:

1 interactions with chain J, 1 interactions with chain O

Hydrophobic interactions: J:A.235, O:Y.610

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2:

8 residues within 4Å:

Chain J: M.623, K.627, G.1004, L.1005, R.1031, R.1034
Ligands: MG.3, ADP.4

No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

4 residues within 4Å:

Chain J: K.627, T.628
Ligands: BEF.2, ADP.4

No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.4:

17 residues within 4Å:

Chain J: V.595, Q.600, E.622, M.623, G.624, L.625, G.626, K.627, T.628, I.629, W.667, N.1006, Q.1008, R.1034, I.1035
Ligands: BEF.2, MG.3

11 PLIP interactions:

11 interactions with chain J

Hydrogen bonds: J:V.595, J:Q.600, J:E.622, J:G.626, J:K.627, J:I.629, J:N.1006, J:Q.1008
Salt bridges: J:K.627, J:R.1034, J:R.1034

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Yuan, J.J. et al., Structure of human chromatin-remodelling PBAF complex bound to a nucleosome. Nature (2022)

Release Date

2022-05-18

Peptides

Histone H4: AE
Histone H2A: BF
Histone H2B 1.1: CG
Histone H3: DV
Isoform 2 of Transcription activator BRG1: J
Actin-like protein 6A: K
Actin, cytoplasmic 1: L
AT-rich interactive domain-containing protein 2,AT-rich interactive domain-containing protein 2: M
PHD finger protein 10: N
Isoform 2 of Bromodomain-containing protein 7: O
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1: P
SWI/SNF complex subunit SMARCC2: QR
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1: S
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1: T
Protein polybromo-1: U
unknown: W

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E
F

B
C

F
G

C
D

G
H

D
E

V
K

J
A

K
N

L
P

M
Q

N
R

O
T

P
V

Q
W

R
X

S
Y

T
Z

U
a

W
M

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H4

Histone H2A

Histone H2B 1.1

Toggle Identical (CG)

Histone H3

Isoform 2 of Transcription activator BRG1

Actin-like protein 6A

Actin, cytoplasmic 1

AT-rich interactive domain-containing protein 2,AT-rich interactive domain-containing protein 2

PHD finger protein 10

Isoform 2 of Bromodomain-containing protein 7

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

SWI/SNF complex subunit SMARCC2

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

Protein polybromo-1

unknown

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1ati.1 | 1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 2oan.1 | 2oan.2 | 2oan.3 | 3lel.1 | 3lel.2 | 3nqu.1 | 3r45.1 | 3u4l.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4wz7.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5aj3.1 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 more...less...

5c3i.6 | 5e5a.1 | 5fl7.1 | 5kgf.1 | 5nui.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5oxv.1 | 5oy7.1 | 5x0x.1 | 5xf3.1 | 5xf4.1 | 5xf5.1 | 6anu.1 | 6b3r.1 | 6bk8.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6f1t.1 | 6f38.1 | 6f3a.1 | 6ftx.1 | 6g0l.1 | 6gmh.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6lth.1 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6mpv.1 | 6n1z.1 | 6n1z.2 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6pxk.1 | 6q9t.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6vzv.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 6znl.1 | 6znm.1 | 6znn.1 | 6zno.1 | 6zo4.1 | 7ado.1 | 7dbp.1 | 7ins.1 | 7ins.4 | 7ins.5 | 7ins.6 | 7ins.8 | 7ins.10 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7nvr.1 | 7nvv.1 | 7nvx.1 | 7nw0.1 | 7otq.1 | 7pdz.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7qj5.1 | 7qj6.1 | 7qj7.1 | 7qj8.1 | 7qj9.1 | 7qja.1 | 7qjb.1 | 7qjc.1 | 7r5r.1 | 7s78.1 | 7s78.2 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7y8r.1 | 7ywx.1 | 7yyh.1 | 7z8f.1 | 7z8m.1 | 7zi4.1 | 7ztc.1 | 7ztd.1 | 8a3y.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8eiq.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8gpn.1 | 8h1t.1 | 8iah.1 | 8iai.1 | 8ib2.1 | 8ib8.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8of4.1 | 8off.1 | 8oi6.1 | 8p94.1 | 8pki.1 | 8pkj.1 | 8ptk.1 | 8qr1.1 | 8rbx.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8t9g.1 | 8t9h.1 | 8tas.1 | 8tb9.1 | 8thu.1 | 8tof.1 | 8u5h.1 | 8uw1.1 | 8v25.1 | 8v26.1 | 8v27.1 | 8v28.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8vrd.1 | 8vrj.1 | 8vrk.1 | 8vx5.1 | 8vx6.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xjv.1 | 8xjv.2 | 8xjv.3 | 8xjv.4 | 8xjv.5 | 8xjv.6 | 8xjv.7 | 8xjv.8 | 8xjv.9 | 8xjv.11 | 8xjv.12 | 8xjv.24 | 8xjv.25 | 8xjv.26 | 8xjv.27 | 8xjv.28 | 8xjv.29 | 8xjv.30 | 8xjv.31 | 8xjv.32 | 8xjv.33 | 8xjv.34 | 8xjv.35 | 8xjv.36 | 8xjv.37 | 8xjv.38 | 8xjv.39 | 8xjv.40 | 8xjv.41 | 8xjv.42 | 8xjv.43 | 8xjv.44 | 8xjv.45 | 8xjv.46 | 8xjv.47 | 8xjv.48 | 8xjv.49 | 8xjv.50 | 8xjv.51 | 8xjv.52 | 8xjv.53 | 8xjv.54 | 8xjv.55 | 8xjv.56 | 8xjv.57 | 8xjv.58 | 8xjv.59 | 8xjv.60 | 8xjv.61 | 8xjv.62 | 8xjv.63 | 8xjv.64 | 8xjv.65 | 8xjv.66 | 8xjv.67 | 8xjv.68 | 8xjv.69 | 8xjv.70 | 8xjv.71 | 8xjv.72 | 8xjv.73 | 8xjv.74 | 8xjv.75 | 8xjv.76 | 8xjv.77 | 8xjv.78 | 8xjv.79 | 8xjv.80 | 8xjv.81 | 8xjv.82 | 8xjv.83 | 8xjv.93 | 8xvg.1 | 8xvt.1 | 8yjf.1 | 8yjm.1 | 8yti.1 | 8z50.1 | 9b3p.1 | 9c4b.1 | 9c57.1 | 9c62.1 | 9c6n.1 | 9fgq.1 | 9fh9.1 | 9gd0.1 | 9gd1.1 | 9gd2.1 | 9gd3.1

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