SMTL ID : 8pvx.1

Structure of the Lifeact13-F-actin complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-mer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain B: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.15, B:S.16, B:G.17, B:L.18, B:G.158, B:D.159, B:K.215, B:E.216 Salt bridges: B:K.20, B:K.20 pi-Stacking: B:Y.308 ADP.3: 17 residues within 4Å: Chain D: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.15, D:S.16, D:G.17, D:L.18, D:D.159, D:D.159, D:G.160, D:K.215 Salt bridges: D:K.20, D:K.20 ADP.5: 18 residues within 4Å: Chain F: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.160, G.184, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.6 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:G.15, F:S.16, F:G.17, F:L.18, F:G.158, F:D.159, F:G.160, F:K.215, F:E.216 Salt bridges: F:K.20, F:K.20 pi-Stacking: F:Y.308 ADP.7: 16 residues within 4Å: Chain H: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, R.212, K.215, E.216, G.304, T.305, Y.308, K.338 Ligands: MG.8 10 PLIP interactions: 10 interactions with chain H Hydrogen bonds: H:S.16, H:G.17, H:L.18, H:L.18, H:G.158, H:D.159, H:G.160, H:K.215 Salt bridges: H:K.20, H:K.20 ADP.9: 17 residues within 4Å: Chain J: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.10 10 PLIP interactions: 10 interactions with chain J Hydrogen bonds: J:S.16, J:G.17, J:L.18, J:L.18, J:G.158, J:D.159, J:K.215 Salt bridges: J:K.20, J:K.20 pi-Stacking: J:Y.308

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: G.158 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain D: G.158 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain F: G.158 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain H: G.158, D.159 Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain J: Q.139 Ligands: ADP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Belyy, A. et al., To be published. To Be Published

Release Date

2024-07-24

Peptides

Lifeact13: ACEGI
Actin, alpha skeletal muscle: BDFHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
J

E
F

G
I

I
G

B
C

D
E

F
A

H
D

J
B

Lifeact13

Actin, alpha skeletal muscle

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