SMTL ID : 9jw0.1

Structure of the N-terminal 3 domains (V1-V3) villin bound to actin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: N.286, D.287, E.310 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.286, A:D.287, A:E.310, H2O.1, H2O.2 CA.2: 4 residues within 4Å: Chain A: G.39, D.40, E.70, V.119 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.39, A:D.40, A:E.70, H2O.1, H2O.2 CA.3: 4 residues within 4Å: Chain A: D.82, G.87, P.89 Chain B: E.169 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.82, A:G.87, A:P.89, B:E.169, H2O.1 CA.4: 4 residues within 4Å: Chain A: G.159, D.160, E.182, D.245 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.159, A:D.160, A:E.182, A:D.245 CA.6: 1 residues within 4Å: Ligands: ATP.5 No protein-ligand interaction detected (PLIP)

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.5: 20 residues within 4Å: Chain B: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.160, V.161, G.184, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.6 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:S.16, B:S.16, B:G.17, B:L.18, B:D.159, B:D.159, B:D.159, B:G.160, B:V.161, B:V.161, B:K.215, B:E.216, B:G.304, B:T.305, B:M.307, B:K.338 Water bridges: B:K.20, B:K.20, B:G.158 Salt bridges: B:K.20, B:K.20 pi-Stacking: B:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robinson, R.C., Structure of the N-terminal 3 domains (V1-V3) villin bound to actin. To Be Published

Release Date

2025-10-15

Peptides

Villin: A
Actin, alpha skeletal muscle: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Villin

Actin, alpha skeletal muscle

Related Entries With Identical Sequence