SMTL ID : 9oin.4 (3 other biounits)

The von Hippel Lindau-ElonginB-ElonginC (VCB) complex with fragment 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 1-(propan-2-yl)-4-[(pyridin-2-yl)methyl]piperazine

01.1: 8 residues within 4Å: Chain C: W.55, F.58, Y.65, H.77, S.78, Y.79, H.82, W.84 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:W.55, C:F.58, C:Y.79, C:W.84 Hydrogen bonds: C:Y.65 pi-Stacking: C:W.55, C:W.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amporndanai, K. et al., NMR-Based Fragment Screen of the von Hippel-Lindau Elongin C&B Complex. Acs Med.Chem.Lett. (2025)

Release Date

2025-07-09

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

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