SMTL ID : 9oiq.3 (3 other biounits)

The von Hippel Lindau-ElonginB-ElonginC (VCB) complex with fragment 15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 2-(5-amino-1H-1,3-benzimidazol-1-yl)ethan-1-ol

01.1: 8 residues within 4Å: Chain C: W.55, F.58, Y.65, H.77, S.78, Y.79, H.82, W.84 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.55, C:F.58, C:Y.79 Hydrogen bonds: C:Y.65, C:Y.79, C:W.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amporndanai, K. et al., NMR-Based Fragment Screen of the von Hippel-Lindau Elongin C&B Complex. Acs Med.Chem.Lett. (2025)

Release Date

2025-07-09

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

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