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SMTL ID : 9qnv.1

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX with compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62
EDO.2:	2 residues within 4Å: Chain A: V.49, K.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.49
EDO.4:	5 residues within 4Å: Chain A: W.40, D.104, I.105, M.108 Ligands: 01.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.105
EDO.5:	2 residues within 4Å: Chain A: Y.96, I.97 No protein-ligand interaction detected (PLIP)

1 x 01: 3-methyl-5-phenyl-[1,3]thiazolo[2,3-c][1,2,4]triazole

01.3:

9 residues within 4Å:

Chain A: W.40, P.41, V.46, L.51, L.53, Y.98, N.99, I.105
Ligands: EDO.4

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:V.46, A:L.51, A:I.105
Hydrogen bonds: A:N.99

1 x K: POTASSIUM ION(Non-covalent)

K.6:	3 residues within 4Å: Chain A: Y.96, I.97, N.99 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.96, A:I.97, A:N.99, H₂O.6

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Krojer, T. et al., CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX with compound 2. To Be Published

Release Date

2025-05-14

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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