SMTL ID : 1a1m.1

MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDE TPYDINQML FROM GAG PROTEIN OF HIV2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x THR- PRO- TYR- ASP- ILE- ASN- GLN- MET- LEU: PEPTIDE TPYDINQML(Non-covalent)

THR-PRO-TYR-ASP-ILE-ASN-GLN-MET-LEU.1: 25 residues within 4Å: Chain A: Y.7, Y.9, R.62, N.63, I.66, F.67, N.70, T.73, Y.74, N.77, I.80, Y.84, R.97, Y.99, D.114, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:F.67, A:Y.74, A:Y.123, A:W.147, A:V.152, A:Q.155, A:L.156, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:N.63, A:N.70, A:N.70, A:Y.74, A:N.77, A:N.77, A:Y.99, A:Y.99, A:T.143, A:Y.159, A:Y.171 Water bridges: A:Y.9, A:R.97 Salt bridges: A:K.146 pi-Stacking: A:Y.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.J. et al., Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53. Immunity (1996)

Release Date

1998-04-08

Peptides

HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain

Beta-2-microglobulin

Related Entries With Identical Sequence