SMTL ID : 1a1o.1

MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDE LS6 (KPIVQYDNF) FROM THE MALARIA PARASITE P. FALCIPARUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- PRO- ILE- VAL- GLN- TYR- ASP- ASN- PHE: PEPTIDE LS6 (KPIVQYDNF)(Non-covalent)

LYS-PRO-ILE-VAL-GLN-TYR-ASP-ASN-PHE.1: 26 residues within 4Å: Chain A: Y.7, Y.9, R.62, N.63, I.66, F.67, T.69, N.70, T.73, E.76, N.77, I.80, Y.84, I.95, R.97, Y.99, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:I.66, A:F.67, A:T.69, A:I.80, A:I.95, A:I.95, A:Y.99, A:Y.123, A:Y.123, A:L.156, A:Y.159, A:Y.159, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:T.69, A:E.76, A:E.76, A:N.77, A:N.77, A:R.97, A:R.97, A:Y.99, A:Y.99, A:T.143, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:R.62, A:Q.65, A:N.70, A:Y.74, A:Y.74 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.J. et al., Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53. Immunity (1996)

Release Date

1998-04-08

Peptides

HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain

Beta-2-microglobulin

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