SMTL ID : 1agd.1

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYKL-INDEX PEPTIDE)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-oligomer

Ligands

1 x GLY- GLY- LYS- LYS- LYS- TYR- LYS- LEU: HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE)(Non-covalent)

GLY-GLY-LYS-LYS-LYS-TYR-LYS-LEU.1: 26 residues within 4Å: Chain A: Y.7, D.9, N.63, I.66, F.67, N.70, T.73, D.74, E.76, S.77, N.80, Y.84, L.95, S.97, Y.99, N.114, Y.116, Y.123, T.143, W.147, V.152, Q.155, D.156, Y.159, W.167, Y.171 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:T.73, A:E.76, A:L.95, A:Y.99, A:Y.116, A:Y.123, A:W.147, A:V.152, A:V.152, A:Y.159, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:N.63, A:N.70, A:N.70, A:E.76, A:E.76, A:S.77, A:N.80, A:S.97, A:S.97, A:Y.99, A:Y.99, A:N.114, A:T.143, A:Q.155, A:D.156, A:Y.159, A:Y.171 Water bridges: A:R.79, A:Y.116, A:Y.116, A:Y.116, A:Y.116, A:K.146 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reid, S.W. et al., Antagonist HIV-1 Gag peptides induce structural changes in HLA B8. J.Exp.Med. (1996)

Release Date

1997-06-16

Peptides

B*0801: A
BETA-2 MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B*0801

BETA-2 MICROGLOBULIN

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