SMTL ID : 1m6o.1

Crystal Structure of HLA B*4402 in complex with HLA DPA*0201 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- GLU- PHE- GLY- ARG- ALA- PHE- SER- PHE: HLA DPA*0201 peptide(Non-covalent)

GLU-GLU-PHE-GLY-ARG-ALA-PHE-SER-PHE.1: 30 residues within 4Å: Chain A: M.5, Y.7, Y.9, T.24, K.45, Y.59, R.62, E.63, I.66, S.67, N.70, E.76, N.77, T.80, Y.84, I.95, Y.99, D.116, Y.123, T.143, K.146, W.147, V.152, Q.155, D.156, Y.159, L.163, S.167, R.170, Y.171 45 PLIP interactions: 45 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:N.77, A:I.95, A:Y.99, A:D.116, A:Y.123, A:Y.123, A:W.147, A:V.152, A:V.152, A:Y.159, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:E.63, A:E.76, A:Y.99, A:Y.99, A:Y.99, A:T.143, A:Q.155, A:Y.159, A:S.167, A:Y.171 Water bridges: A:Y.9, A:R.62, A:R.62, A:R.62, A:N.70, A:N.70, A:N.70, A:N.70, A:E.76, A:N.77, A:N.77, A:T.80, A:R.97, A:R.97, A:Q.155, A:R.170 Salt bridges: A:K.45, A:R.62, A:K.146, A:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Macdonald, W.A. et al., A naturally selected dimorphism within the HLA-B44 supertype alters class I structure, peptide repertoire, and T cell recognition. J.Exp.Med. (2003)

Release Date

2003-09-02

Peptides

HLA class I histocompatibility antigen, BW-44(B-12) B*4402 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, BW-44(B-12) B*4402 alpha chain

Beta-2-microglobulin

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