SMTL ID : 1mi5.1

The crystal structure of LC13 TcR in complex with HLAB8-EBV peptide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x PHE- LEU- ARG- GLY- ARG- ALA- TYR- GLY- LEU: Epstein Barr Virus peptide(Non-covalent)

PHE-LEU-ARG-GLY-ARG-ALA-TYR-GLY-LEU.1: 36 residues within 4Å: Chain A: Y.7, D.9, S.24, F.36, Y.59, R.62, N.63, I.66, F.67, N.70, T.73, D.74, E.76, S.77, N.80, L.81, Y.84, Y.99, N.114, Y.116, Y.123, T.143, K.146, W.147, A.150, V.152, Q.155, D.156, Y.159, W.167, Y.171 Chain C: Y.30, L.90 Chain D: Q.96, A.97, Y.98 50 PLIP interactions: 5 interactions with chain D, 40 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: D:A.97, A:Y.7, A:F.36, A:Y.59, A:Y.59, A:R.62, A:I.66, A:F.67, A:Y.99, A:Y.123, A:T.143, A:W.147, A:A.150, A:V.152, A:Y.159, A:W.167, A:W.167, C:Y.30, C:L.90 Hydrogen bonds: D:Q.96, A:Y.7, A:N.63, A:N.70, A:N.70, A:T.73, A:E.76, A:S.77, A:N.80, A:Y.84, A:Y.99, A:Y.99, A:N.114, A:Y.116, A:Y.116, A:Y.116, A:K.146, A:Q.155, A:Y.171, A:Y.171 Water bridges: D:A.97, D:A.97, C:T.28, C:T.28, C:H.32 pi-Stacking: D:Y.98 Salt bridges: A:D.9, A:D.74, A:K.146, A:D.156 pi-Cation interactions: A:Y.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kjer-Nielsen, L. et al., A Structural Basis for the Selection of Dominant alphabeta T Cell Receptors in Antiviral Immunity. IMMUNITY (2003)

Release Date

2003-02-04

Peptides

MHC heavy chain: A
beta 2 microglobulin: B
TcR alpha chain: C
TcR beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

MHC heavy chain

beta 2 microglobulin

TcR alpha chain

TcR beta chain

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