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SMTL ID : 2axf.1

The Immunogenicity of a Viral Cytotoxic T Cell Epitope is controlled by its MHC-bound Conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1:	5 residues within 4Å: Chain A: F.8, Y.27, D.29, D.30 Chain B: Y.63 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.8 Hydrogen bonds: A:D.29 Water bridges: B:Y.63, B:Y.63
ACY.2:	6 residues within 4Å: Chain A: W.204, R.234, Q.242 Chain B: Y.10, S.11, P.14 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.242, B:M.99 Hydrophobic interactions: B:Y.10 Water bridges: B:S.11, B:S.11

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Tynan, F.E. et al., The immunogenicity of a viral cytotoxic T cell epitope is controlled by its MHC-bound conformation. J.Exp.Med. (2005)

Release Date

2005-11-29

Peptides

HLA class I histocompatibility antigen, B*3508 heavy chain: A
Beta-2-microglobulin: B
10-mer peptide from BZLF1 trans-activator protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA class I histocompatibility antigen, B*3508 heavy chain

Beta-2-microglobulin

10-mer peptide from BZLF1 trans-activator protein

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