SMTL ID : 2cii.1

The crystal structure of H-2Db complexed with a partial peptide epitope suggests an MHC Class I assembly-intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- PRO- ALA- LEU: NUCLEOPROTEIN(Non-covalent)

TYR-PRO-ALA-LEU.1: 14 residues within 4Å: Chain A: W.73, V.76, S.77, N.80, L.81, Y.84, L.95, T.143, K.146, W.147, S.150, H.155, Y.156 Ligands: GOL.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.73, A:V.76, A:L.81, A:L.81, A:L.95, A:T.143, A:W.147, A:H.155 Hydrogen bonds: A:S.77, A:N.80, A:Y.84, A:K.146 Salt bridges: A:K.146 pi-Stacking: A:Y.156

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.7, E.9, E.63, Y.159 Ligands: GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.9, A:E.63, A:Y.159 Water bridges: A:Y.7, A:S.24, A:K.66, A:S.99 GOL.3: 5 residues within 4Å: Chain A: Q.97, S.99, Y.159 Ligands: TYR-PRO-ALA-LEU.1, GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.99, A:S.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glithero, A. et al., The crystal structure of H-2D(b) complexed with a partial peptide epitope suggests a major histocompatibility complex class I assembly intermediate. J. Biol. Chem. (2006)

Release Date

2006-03-29

Peptides

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN

BETA-2-MICROGLOBULIN

Related Entries With Identical Sequence