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SMTL ID : 2cik.1

Insights Into Crossreactivity in Human Allorecognition: The Structure of HLA-B35011 Presenting an Epitope derived from Cytochrome P450.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- PRO- ILE- VAL- VAL- LEU- HIS- GLY- TYR: PEPTIDE(Non-covalent)

LYS-PRO-ILE-VAL-VAL-LEU-HIS-GLY-TYR.1:

29 residues within 4Å:

Chain A: M.5, Y.7, Y.9, R.62, N.63, I.66, F.67, T.69, N.70, T.73, Y.74, S.77, N.80, L.81, Y.84, I.95, R.97, Y.99, S.116, Y.123, T.143, K.146, W.147, A.150, Q.155, L.156, Y.159, W.167, Y.171

31 PLIP interactions:

31 interactions with chain A

Hydrophobic interactions: A:F.67, A:Y.74, A:L.81, A:Y.99, A:Y.123, A:T.143, A:A.150, A:L.156, A:Y.159, A:Y.159, A:Y.159, A:W.167, A:W.167
Hydrogen bonds: A:Y.7, A:Y.74, A:S.77, A:R.97, A:Y.99, A:Y.99, A:S.116, A:T.143, A:Y.159, A:Y.171
Water bridges: A:N.70, A:N.70, A:N.70, A:N.70, A:K.146, A:K.146
Salt bridges: A:K.146
pi-Stacking: A:W.147

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	6 residues within 4Å: Chain A: R.6, F.8, Y.27, D.29, D.30 Chain B: Y.63 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.29 Water bridges: B:F.56
GOL.3:	5 residues within 4Å: Chain A: M.12 Chain B: S.33, D.34, L.54, L.64 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.33, B:S.33 Water bridges: B:S.33, B:S.52, B:L.54
GOL.4:	10 residues within 4Å: Chain A: W.204, L.206, R.234, Q.242 Chain B: Y.10, S.11, H.13, P.14, R.97, M.99 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.11, B:S.11, B:R.97, A:R.234 Water bridges: A:Q.242

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hourigan, C.S. et al., The Structure of the Human Allo-Ligand Hla-B3501 in Complex with a Cytochrome P450 Peptide: Steric Hindrance Influences Tcr Allo-Recognition. Eur.J.Immunol. (2006)

Release Date

2006-10-25

Peptides

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-35 ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-35 ALPHA CHAIN

BETA-2-MICROGLOBULIN

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