SMTL ID : 2h6p.1

Crystal structure of HLA-B*3501 presenting the human cytochrome P450 derived peptide, KPIVVLHGY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- PRO- ILE- VAL- VAL- LEU- HIS- GLY- TYR: 9 mer peptide from Cytochrome P450(Non-covalent)

LYS-PRO-ILE-VAL-VAL-LEU-HIS-GLY-TYR.1: 29 residues within 4Å: Chain A: M.5, Y.7, Y.9, R.62, N.63, I.66, F.67, T.69, N.70, T.73, Y.74, S.77, N.80, L.81, Y.84, I.95, R.97, Y.99, S.116, Y.123, T.143, K.146, W.147, A.150, Q.155, L.156, Y.159, W.167, Y.171 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:F.67, A:Y.74, A:L.81, A:Y.99, A:Y.123, A:T.143, A:A.150, A:Q.155, A:L.156, A:L.156, A:Y.159, A:Y.159, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:Y.74, A:S.77, A:R.97, A:Y.99, A:Y.99, A:S.116, A:T.143, A:Y.159, A:Y.171 Water bridges: A:N.70, A:T.73, A:K.146 Salt bridges: A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Archbold, J.K. et al., Alloreactivity between disparate cognate and allogeneic pMHC-I complexes is the result of highly focused, peptide-dependent structural mimicry. J.Biol.Chem. (2006)

Release Date

2006-09-19

Peptides

HLA-B35: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA-B35

Beta-2-microglobulin

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