SMTL ID : 2rfx.1

Crystal Structure of HLA-B*5701, presenting the self peptide, LSSPVTKSF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- SER- SER- PRO- VAL- THR- LYS- SER- PHE: LSSPVTKSF(Non-covalent)

LEU-SER-SER-PRO-VAL-THR-LYS-SER-PHE.1: 25 residues within 4Å: Chain A: M.5, Y.7, Y.9, E.63, N.66, M.67, T.73, Y.74, N.77, I.80, Y.84, I.95, Y.99, D.114, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, L.163, W.167, Y.171 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:N.77, A:I.80, A:I.95, A:Y.123, A:W.147, A:V.152, A:Q.155, A:L.156, A:L.163, A:W.167 Hydrogen bonds: A:E.63, A:N.66, A:N.77, A:N.77, A:Y.84, A:Y.99, A:Y.171 Water bridges: A:Y.7, A:D.114, A:S.116, A:Q.155 Salt bridges: A:K.146

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: R.219, R.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.219, A:R.256 GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.4: 2 residues within 4Å: Chain B: E.77, K.94 No protein-ligand interaction detected (PLIP) GOL.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chessman, D. et al., Human leukocyte antigen class I-restricted activation of CD8+ T cells provides the immunogenetic basis of a systemic drug hypersensitivity. Immunity (2008)

Release Date

2008-07-08

Peptides

HLA class I histocompatibility antigen, B-57 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-57 alpha chain

Beta-2-microglobulin

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