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SMTL ID : 2xew.2 (2 other biounits)

Crystal structure of K11-linked diubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	2 residues within 4Å: Chain A: V.70, L.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.71
EDO.4:	3 residues within 4Å: Chain B: L.8, V.70, L.71 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.71, B:L.71
EDO.5:	4 residues within 4Å: Chain D: T.7, L.8, T.9, K.11 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:L.8

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2:	6 residues within 4Å: Chain B: P.37, D.39, Q.40, R.74 Chain C: G.35 Ligands: FLC.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.74 Salt bridges: B:R.74
FLC.3:	7 residues within 4Å: Chain A: P.37, D.39, Q.40, R.74 Chain B: G.35, P.37 Ligands: FLC.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.74 Water bridges: A:D.39

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Bremm, A. et al., Lys11-Linked Ubiquitin Chains Adopt Compact Conformations and are Preferentially Hydrolyzed by the Deubiquitinase Cezanne. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-07-14

Peptides

UBIQUITIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

UBIQUITIN

Toggle Identical (ABCD)

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1aar.1 | 1cmx.1 | 1d3z.1 | 1f9j.1 | 1fxt.1 | 1g6j.1 | 1nbf.1 | 1nbf.2 | 1ogw.1 | 1p3q.1 | 1p3q.2 | 1q5w.1 | 1s1q.1 | 1s1q.2 | 1tbe.1 | 1ubi.1 | 1ubq.1 | 1uzx.1 | 1v80.1 | 1v81.1 | 1wr6.1 | 1wr6.2 | 1wr6.3 | 1wr6.4 | 1wrd.1 | 1wrd.2 | 1xqq.1 | 1yd8.1 | 1yd8.2 | 2ayo.1 more...less...

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