- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)
ATP.1: 22 residues within 4Å:- Chain B: G.212, G.213, P.252, G.253, T.254, G.255, K.256, T.257, L.258, R.261, N.356, H.392, G.416, A.417, R.420
- Chain C: L.310, D.314, A.337, R.340, G.342, R.343
- Ligands: MG.2
18 PLIP interactions:12 interactions with chain B, 6 interactions with chain C- Hydrogen bonds: B:G.213, B:G.253, B:T.254, B:T.254, B:G.255, B:K.256, B:T.257, B:T.257, B:R.261, B:N.356, C:D.314, C:R.343
- Salt bridges: B:K.256, B:K.256, C:R.340, C:R.340, C:R.340, C:R.343
ATP.3: 19 residues within 4Å:- Chain C: D.183, G.185, L.187, P.225, G.226, T.227, G.228, K.229, T.230, L.231, I.361, H.365, G.389, A.390, Q.393
- Chain G: N.277, R.306, R.309
- Ligands: MG.4
13 PLIP interactions:4 interactions with chain G, 9 interactions with chain C- Hydrogen bonds: G:N.277, G:R.309, C:G.226, C:G.226, C:T.227, C:G.228, C:K.229, C:T.230, C:T.230, C:T.230, C:L.231
- Salt bridges: G:R.306, G:R.309
ATP.5: 17 residues within 4Å:- Chain D: P.215, G.216, T.217, G.218, K.219, T.220, M.221, E.273, N.319, I.356, G.380, A.381
- Chain E: K.213, D.313, R.339, R.342
- Ligands: MG.6
14 PLIP interactions:7 interactions with chain D, 7 interactions with chain E- Hydrogen bonds: D:G.216, D:G.218, D:K.219, D:T.220, D:T.220, D:N.319, E:R.339
- Salt bridges: D:K.219, E:R.339, E:R.339, E:R.339, E:R.342, E:R.342, E:R.342
ATP.7: 20 residues within 4Å:- Chain E: G.182, I.183, P.224, G.225, T.226, G.227, K.228, T.229, L.230, E.282, N.328, I.360, H.364, G.388, A.389, R.392
- Chain F: D.313, R.339, R.342
- Ligands: MG.8
20 PLIP interactions:7 interactions with chain F, 13 interactions with chain E- Hydrogen bonds: F:D.313, E:G.225, E:T.226, E:T.226, E:G.227, E:K.228, E:T.229, E:T.229, E:T.229, E:L.230, E:N.328
- Salt bridges: F:R.339, F:R.339, F:R.339, F:R.342, F:R.342, F:R.342, E:K.228, E:K.228, E:K.233
ATP.9: 23 residues within 4Å:- Chain B: D.341, A.364, R.367, R.370
- Chain F: D.182, V.183, G.184, G.185, P.223, P.224, G.225, T.226, G.227, K.228, T.229, L.230, N.328, I.360, H.364, G.388, A.389, K.392
- Ligands: MG.10
16 PLIP interactions:12 interactions with chain F, 4 interactions with chain B- Hydrogen bonds: F:G.184, F:G.184, F:G.225, F:T.226, F:G.227, F:K.228, F:T.229, F:L.230, F:N.328, F:K.392, B:D.341, B:A.364, B:R.370
- Salt bridges: F:K.228, F:K.228, B:R.370
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain B: E.310, N.356
- Ligands: ATP.1
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.310
MG.4: 2 residues within 4Å:- Chain G: R.306
- Ligands: ATP.3
No protein-ligand interaction detected (PLIP)MG.6: 5 residues within 4Å:- Chain D: T.220, D.272, E.273, N.319
- Ligands: ATP.5
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:E.273
MG.8: 4 residues within 4Å:- Chain E: T.229
- Chain F: D.313, R.342
- Ligands: ATP.7
No protein-ligand interaction detected (PLIP)MG.10: 4 residues within 4Å:- Chain B: D.341
- Chain F: T.229, D.281
- Ligands: ATP.9
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:T.229, F:D.281
MG.12: 2 residues within 4Å:- Chain G: P.191
- Ligands: ADP.11
No protein-ligand interaction detected (PLIP)- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.11: 14 residues within 4Å:- Chain G: M.149, V.150, P.190, P.191, G.192, T.193, G.194, K.195, T.196, L.197, I.330, H.331, K.359
- Ligands: MG.12
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:G.192, G:T.193, G:T.193, G:G.194, G:K.195, G:T.196, G:T.196, G:T.196
- Salt bridges: G:K.195
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, K.Y.S. et al., Allosteric control of Ubp6 and the proteasome via a bidirectional switch. Nat Commun (2022)
- Release Date
- 2022-06-01
- Peptides
- 26S proteasome regulatory subunit RPN1: A
RPT1 isoform 1: B
RPT2 isoform 1: C
RPT3 isoform 1: D
RPT4 isoform 1: E
RPT5 isoform 1: F
RPT6 isoform 1: G
Ubiquitin carboxyl-terminal hydrolase: H
Polyubiquitin-B: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
ZB
HC
ID
KE
LF
MG
JH
8I
9
SMTL ID : 7qo4.1
26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)
26S proteasome regulatory subunit RPN1
RPT1 isoform 1
RPT2 isoform 1
RPT3 isoform 1
RPT4 isoform 1
RPT5 isoform 1
RPT6 isoform 1
Ubiquitin carboxyl-terminal hydrolase
Polyubiquitin-B
Related Entries With Identical Sequence
1aar.1 | 1cmx.1 | 1d3z.1 | 1f9j.1 | 1fxt.1 | 1g6j.1 | 1nbf.1 | 1nbf.2 | 1ogw.1 | 1p3q.1 | 1p3q.2 | 1q5w.1 | 1s1q.1 | 1s1q.2 | 1tbe.1 | 1ubi.1 | 1ubq.1 | 1uzx.1 | 1v80.1 | 1v81.1 | 1wr6.1 | 1wr6.2 | 1wr6.3 | 1wr6.4 | 1wrd.1 | 1wrd.2 | 1xqq.1 | 1yd8.1 | 1yd8.2 | 2ayo.1 more...less...2ayo.2 | 2bgf.1 | 2c7m.1 | 2c7n.1 | 2c7n.2 | 2c7n.3 | 2c7n.4 | 2c7n.5 | 2c7n.6 | 2d3g.1 | 2den.1 | 2dx5.1 | 2fid.1 | 2fif.1 | 2fif.2 | 2fif.3 | 2fuh.1 | 2g45.1 | 2g45.2 | 2gmi.1 | 2hd5.1 | 2hth.1 | 2jf5.1 | 2jri.1 | 2jy6.1 | 2jzz.1 | 2k39.1 | 2k8b.1 | 2k8c.1 | 2kde.1 | 2kdf.1 | 2klg.1 | 2kn5.1 | 2kox.1 | 2ktf.1 | 2kwu.1 | 2kwv.1 | 2l0f.1 | 2l0t.1 | 2l3z.1 | 2lj5.1 | 2lvo.1 | 2lvp.1 | 2lvq.1 | 2lz6.1 | 2mbh.1 | 2mbo.1 | 2mbq.1 | 2mcn.1 | 2mj5.1 | 2mjb.1 | 2mor.1 | 2mro.1 | 2n3u.1 | 2n3v.1 | 2n3w.1 | 2nr2.1 | 2o6v.1 | 2o6v.2 | 2o6v.3 | 2oob.1 | 2pe9.1 | 2pea.1 | 2qho.1 | 2qho.2 | 2qho.3 | 2qho.4 | 2rr9.1 | 2wwz.1 | 2wx0.1 | 2wx0.2 | 2wx1.1 | 2xbb.1 | 2xbb.2 | 2xew.1 | 2xew.2 | 2xew.3 | 2xk5.1 | 2z59.1 | 2zcc.1 | 2zcc.2 | 2zcc.3 | 2zcc.4 | 3a33.1 | 3alb.1 | 3aul.1 | 3eec.1 | 3eec.2 | 3eec.3 | 3eec.4 | 3efu.1 | 3ehv.1 | 3ehv.2 | 3ehv.3 | 3h1u.1 | 3h1u.2 | 3h7p.1 | 3h7s.1 | 3h7s.2 | 3h7s.3 | 3hm3.1 | 3hm3.2 | 3hm3.3 | 3hm3.4 | 3jco.1 | 3jcp.1 | 3m3j.1 | 3m3j.2 | 3m3j.3 | 3mhs.1 | 3n30.1 | 3n30.2 | 3n32.1 | 3nhe.1 | 3ns8.1 | 3ns8.2 | 3ns8.3 | 3ofi.1 | 3ofi.2 | 3phd.1 | 3tbl.1 | 3tmp.1 | 3tmp.2 | 3tmp.3 | 3tmp.4 | 3ugb.1 | 3vht.1 | 3vuw.1 | 3vuw.2 | 3vuw.3 | 3vux.1 | 3vux.2 | 3vux.3 | 3vuy.1 | 3vuy.2 | 3vuy.3 | 4bbn.1 | 4bos.1 | 4boz.1 | 4boz.2 | 4boz.3 | 4bvu.1 | 4cr2.1 | 4cr3.1 | 4cr4.1 | 4ddg.1 | 4ddg.2 | 4ddi.1 | 4dhj.1 | 4dhj.2 | 4dhj.4 | 4dhj.5 | 4dhz.1 | 4jqw.1 | 4k7s.1 | 4k7s.2 | 4k7s.3 | 4k7u.1 | 4k7u.2 | 4k7u.3 | 4k7w.1 | 4k7w.2 | 4k7w.3 | 4ldt.1 | 4ljo.1 | 4ljp.1 | 4m0w.1 | 4mm3.1 | 4s1z.1 | 4s1z.2 | 4s1z.3 | 4s1z.4 | 4s1z.5 | 4s22.1 | 4s22.2 | 4un2.1 | 4wlr.1 | 4wur.1 | 4wzp.1 | 4wzp.2 | 4wzp.3 | 4wzp.4 | 4wzp.5 | 4wzp.6 | 4wzp.7 | 4wzp.8 | 4xkh.1 | 4xkh.2 | 4xkh.3 | 4xof.1 | 4xok.1 | 4xok.2 | 4xok.3 | 4xol.1 | 4xol.2 | 4xyz.1 | 4y1h.1 | 4z9s.1 | 4zux.1 | 4zux.2 | 5a5b.1 | 5ait.1 | 5aiu.1 | 5bz0.1 | 5d0k.1 | 5d0k.2 | 5d0k.3 | 5d0k.4 | 5d0m.1 | 5dfl.1 | 5edv.1 | 5edv.2 | 5edv.3 | 5eya.1 | 5fer.1 | 5gjq.1 | 5go7.1 | 5go8.1 | 5gob.1 | 5goc.1 | 5god.1 | 5gog.1 | 5goh.1 | 5goi.1 | 5goj.1 | 5gok.1 | 5h7s.1 | 5j8p.1 | 5jbv.1 | 5jby.1 | 5jqs.1 | 5jtj.1 | 5jtj.2 | 5jtv.1 | 5jtv.2 | 5jtv.3 | 5jtv.4 | 5jtv.5 | 5jtv.6 | 5jtv.7 | 5k9p.1 | 5kgf.1 | 5kyc.1 | 5kyd.1 | 5kye.1 | 5kye.2 | 5kyf.1 | 5mn9.1 | 5mp9.1 | 5mpa.1 | 5mpb.1 | 5mpc.1 | 5mpd.1 | 5mpe.1 | 5mpe.2 | 5nmc.1 | 5nmc.2 | 5nmc.3 | 5nvg.1 | 5ohl.1 | 5ohl.2 | 5ohl.3 | 5ohl.4 | 5ohl.5 | 5ohl.6 | 5ohl.7 | 5ohp.1 | 5ohv.1 | 5tut.1 | 5txk.1 | 5ujl.1 | 5ujn.1 | 5ulf.1 | 5ulf.2 | 5ulh.1 | 5ulk.1 | 5v1y.1 | 5v1y.2 | 5v1z.1 | 5v1z.2 | 5vey.1 | 5vf0.1 | 5vnz.1 | 5vnz.2 | 5vo0.1 | 5vzm.1 | 5wfi.1 | 5wfi.2 | 5wvi.1 | 5wvk.1 | 5x3m.1 | 5x3n.1 | 5x3o.1 | 5xbo.1 | 5xdp.2 | 5xiu.1 | 5xk4.1 | 5xk5.1 | 5xpk.1 | 5xu8.1 | 5xve.1 | 5ymy.1 | 5zbu.2 | 6aqr.1 | 6asr.1 | 6asr.2 | 6b7m.1 | 6b7o.1 | 6djx.1 | 6e2b.1 | 6ef3.1 | 6ftx.1 | 6fvt.1 | 6fvu.1 | 6fvv.1 | 6fvx.1 | 6fvy.1 | 6if1.1 | 6if1.2 | 6isu.1 | 6j2c.1 | 6j2n.1 | 6j2q.1 | 6j2x.1 | 6j30.1 | 6jb6.1 | 6jb7.1 | 6jma.1 | 6jwi.1 | 6k9p.1 | 6kl4.1 | 6kow.1 | 6kox.1 | 6lp2.1 | 6n13.1 | 6nxk.1 | 6nxk.2 | 6oi4.1 | 6oi4.2 | 6p5b.1 | 6q00.1 | 6q01.1 | 6q01.2 | 6qml.1 | 6qml.2 | 6rya.1 | 6rya.2 | 6rya.3 | 6s53.1 | 6s53.2 | 6sqr.1 | 6t9l.1 | 6tbm.1 | 6tnf.1 | 6ttu.1 | 6tuv.1 | 6tuv.2 | 6txb.1 | 6txb.2 | 6v5d.1 | 6vae.1 | 6vaf.1 | 6w9d.1 | 6w9d.2 | 6w9d.3 | 6wjd.1 | 6wtg.1 | 6z7v.1 | 7bbd.1 | 7bbf.1 | 7cap.1 | 7dni.1 | 7dnj.1 | 7f0u.1 | 7f0u.2 | 7f7x.1 | 7jxv.1 | 7keo.1 | 7keo.2 | 7m4m.1 | 7m4m.2 | 7m4n.1 | 7m4n.2 | 7m4o.1 | 7myf.2 | 7npi.1 | 7npi.2 | 7npi.3 | 7npi.4 | 7npi.5 | 7npi.6 | 7npi.7 | 7ojx.1 | 7owd.2 | 7qo3.1 | 7qo5.1 | 7qo6.1 | 7r71.1 | 7uv5.1 | 7uyh.1 | 7w38.1 | 7w39.1 | 7w3a.1 | 7w3b.1 | 7w3c.1 | 7w3f.1 | 7w3g.1 | 7w3h.1 | 7w3i.1 | 7w3j.1 | 7w3k.1 | 7w3m.1 | 7xcr.1 | 7xct.1 | 7xd0.1 | 8b3g.1 | 8b3i.1 | 8c07.1 | 8c83.1 | 8cah.1 | 8cas.1 | 8e7o.1 | 8eaz.1 | 8eaz.2 | 8eb0.1 | 8f1f.1 | 8f1f.2 | 8grm.1 | 8h1t.1 | 8ic9.1 | 8ic9.2 | 8itp.1 | 8itp.2 | 8j1p.1 | 8off.1 | 8pjn.1 | 8pmq.1 | 8rx0.1 | 8svf.1 | 8u5h.1 | 8xep.1 | 9avt.1