SMTL ID : 8pmq.1

Catalytic module of yeast GID E3 ligase bound to multiphosphorylated Ubc8~ubiquitin

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.379, H.381, C.401, C.404 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.379, A:H.381, A:C.401, A:C.404 ZN.2: 5 residues within 4Å: Chain A: H.356 Chain B: C.395, C.434, V.436, C.437 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Metal complexes: A:H.356, B:C.395, B:C.434, B:C.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chrustowicz, J. et al., Multisite phosphorylation dictates selective E2-E3 pairing as revealed by Ubc8/UBE2H-GID/CTLH assemblies. Mol.Cell (2024)

Release Date

2024-01-03

Peptides

E3 ubiquitin-protein ligase RMD5: A
Protein FYV10: B
Ubiquitin-conjugating enzyme E2-24 kDa: C
Ubiquitin: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
2

B
9

C
E

D
U

E3 ubiquitin-protein ligase RMD5

Protein FYV10

Ubiquitin-conjugating enzyme E2-24 kDa

Ubiquitin

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