SMTL ID : 5dfl.1

Crystal structure of Ube2K~Ubiquitin conjugate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain B: P.71, K.72, V.73, A.90, I.91, L.96 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.71, B:V.73, B:I.91 GOL.2: 8 residues within 4Å: Chain B: R.74, F.75, I.76, T.77, K.78, V.87, T.88, G.89 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.74, B:R.74 Water bridges: B:T.77, B:S.85 GOL.3: 3 residues within 4Å: Chain B: V.129, S.185, K.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.186 Water bridges: B:K.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Middleton, A.J. et al., The molecular basis of lysine 48 ubiquitin chain synthesis by Ube2K. Sci Rep (2015)

Release Date

2015-12-02

Peptides

Ubiquitin: A
Ubiquitin-conjugating enzyme E2 K: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Ubiquitin

Ubiquitin-conjugating enzyme E2 K

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